Persicobacter psychrovividus: PEPS_20100
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Entry
PEPS_20100 CDS
T09740
Symbol
phrB1
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
ppsv
Persicobacter psychrovividus
Brite
KEGG Orthology (KO) [BR:
ppsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsv03400
]
PEPS_20100 (phrB1)
Enzymes [BR:
ppsv01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
PEPS_20100 (phrB1)
DNA repair and recombination proteins [BR:
ppsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
PEPS_20100 (phrB1)
Prokaryotic type
PEPS_20100 (phrB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
BDC99729
UniProt:
A0ABN6L977
LinkDB
All DBs
Position
complement(2376802..2378085)
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AA seq
427 aa
AA seq
DB search
MRRDLRFKDNHALFEALEADEPVVPLFIFDRDILDELPEDDARVTFIYERLEDLRDKIDG
QVFEFIYDEPLKAWEQVIEKYEVKKVFANHDYEPYADERDEQVRDLLEGHDIVFETFKDQ
VIFEKLEVAKDDGTAYRVFTPYKKVWLAKYKKEGEQHFLSENRLSHILEGQPKFKLPTLK
KMGFSGFKYEDMPTKVVNKRTLQNYEDKRDFPAEEGTTRIGLHLRFGTVSIRDLVAKAMD
ESEVYLSELIWREFYAMILANFPHVVSEAFKAKYDNVPWRNDEEGFEKWCKGETGYPMVD
AGMRQLNQTGYMHNRVRMVVASFLTKHLLIDWRWGEAYFAEKLLDYELASNNGGWQWAAG
TGTDAQPYFRVFNPESQFNKFDPDEHYVKKWVPEYGTDDYVEPMVEHKSARQRAIDTYKE
ALDKADG
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgtgatcttcgttttaaggataatcacgcactgtttgaggcccttgaagccgac
gaacctgttgttccactttttatctttgatcgggatattcttgatgaactgcctgaagat
gatgcgcgggtaactttcatttatgaacgtcttgaagatttacgcgataagattgacggg
caggtgttcgagtttatctatgatgaacccttgaaggcctgggagcaggtgattgaaaag
tacgaggtcaagaaggtatttgccaatcatgattatgagccttatgctgatgaaagggat
gagcaggttcgtgatttgcttgaaggacacgatatcgtttttgaaacttttaaggatcag
gtgatttttgaaaaactagaggttgccaaagatgatggtaccgcctatcgggtgtttacg
ccctataaaaaagtgtggcttgcgaaatataaaaaggaaggggagcagcacttcctttct
gaaaatcggctgagccatattttggaaggccaaccgaaattcaaactgcctaccttgaag
aaaatgggtttttcaggcttcaaatatgaggacatgcccaccaaggtggtgaacaagcgg
acgttgcaaaattatgaggataagcgggatttcccggccgaggaaggcacgacccgcatt
gggttacacctaaggtttgggacggtcagtattcgtgatttggtggccaaggcgatggac
gaaagtgaagtttacctgagtgagttgatctggcgggaattttatgccatgattctggcg
aactttccgcatgtggtcagtgaggcctttaaggcaaaatacgataatgtcccgtggcga
aatgacgaagagggttttgagaaatggtgcaagggcgaaacaggttacccgatggtggat
gccggaatgcgacagctcaaccaaacggggtatatgcacaatcgggtgagaatggtggtg
gcgagtttcctgaccaagcacctgctgattgactggcgatggggtgaggcttattttgcg
gaaaaattactggattacgaattggcttccaataatgggggctggcaatgggctgcagga
acaggcaccgatgctcagccttattttcgggtgttcaatccagaaagtcaattcaataaa
tttgaccctgacgagcattatgtgaaaaagtgggtgccggagtatggtaccgatgattat
gtggaacctatggtcgagcataaatcggctcggcagcgggctattgatacctataaagaa
gcactggacaaagccgatggttga
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