Persicobacter psychrovividus: PEPS_25520
Help
Entry
PEPS_25520 CDS
T09740
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
ppsv
Persicobacter psychrovividus
Pathway
ppsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEPS_25520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsv03021
]
PEPS_25520
03019 Messenger RNA biogenesis [BR:
ppsv03019
]
PEPS_25520
Transcription machinery [BR:
ppsv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PEPS_25520
Messenger RNA biogenesis [BR:
ppsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PEPS_25520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
OB_RNB
NACHT
S1CSD-TOTE-2
AAA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
BDD00272
LinkDB
All DBs
Position
complement(3019765..3021813)
Genome browser
AA seq
682 aa
AA seq
DB search
MYNIEELSVKLLSELKEVAEELGVTKYKSLPKKELIYKILDQQAVMPEDQLQKLIEKKQT
APAAEKKEAKPKAEKKDKPAKEKPARKPREPKAAKEKPARAPKAEKPAADAPAFESKLPK
RESVKTIEPVGIDEKPAEKREKRERKPRAERPERTERPNDRNNNDRNKERKERKPRNNNK
NNESDKQEDLLDLFTAAVTSGKIPEPAPATAPTQPTPEETKPVSEEKAPEEAAETIAPVA
KKQDEPVAIPPRKREPVAPIAPAEEEVAATEEADAPEEKTERREQREPRDNRDNRDDRMN
KRQLQQTIKDFDGIVESEGVLEIMQDGYGFLRSSDYNYLASPDDIYVSPSQIKLFGLKTG
DTVCGSIRPPKEGEKYFALLRVETVNGKTTEEIRDRVPFEHLTPLFPQEKLNLVDQTNKY
STRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKDIANSIAKNHPEVYLIILLIDERPEEVT
DMARSVRAEVVSSTFDEQAERHVKVSNMVLEKSKRMVECGHDVVILLDSITRLARAHNTV
VPSSGKILSGGVDANALHKPKRFFGAARNVENGGSLTIVATALTETGSKMDEVIFEEFKG
TGNMELQLDRKLANRRVYPAIDILSSGTRREDLLTDRDSLQKVWLLRKHGLSDMNSQEAM
EWMLEKMRGTKDNEEFLLSMNG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtacaatatcgaagaactgagtgtcaaactactttctgaattgaaagaagttgccgaa
gagttgggagttaccaaatataaaagccttcctaaaaaagagttgatctataaaatcctc
gatcaacaagcggtaatgcccgaagaccagttgcaaaaactgatcgaaaaaaaacaaact
gctcctgctgctgagaaaaaagaagcaaaacccaaagcagaaaagaaagacaaacctgcc
aaagaaaagcctgcacgcaaacctcgtgagccaaaagcagccaaagaaaaaccggcacgt
gcaccaaaagcagaaaagcctgcagctgatgcccctgcttttgaatcgaaattaccaaag
cgtgaatctgtaaaaacgattgagcctgttggtattgacgagaagcctgcggaaaagcgt
gaaaaacgtgagcgtaagcctcgtgctgaacgcccagagcgtactgagcgccctaacgat
cgcaataataacgaccgtaacaaagagcgcaaggagcgtaaaccacgcaacaacaacaaa
aataatgagtcggataagcaagaggatttgcttgacctattcactgctgcggtaacgtca
ggaaaaattcctgagccagcaccggctacagcacctacccaacctacccctgaagaaaca
aagcctgtgtcagaagagaaagcgcctgaagaggccgcagaaactatcgctcctgtagct
aaaaagcaagacgagcctgtggccattccaccacgcaagcgtgagcctgttgcaccgatt
gcacctgctgaagaagaagtggcagccacagaagaggctgatgctccagaagaaaaaacg
gagcgtcgtgaacagcgcgagccaagagataatcgtgataaccgtgacgaccgcatgaac
aagcgccagttgcaacaaaccattaaggattttgacggtatcgttgaaagcgaaggtgtg
ttggagatcatgcaggatggctatggtttcttgcgttcatcagactacaactatttggct
tcgccggatgatatttacgtatctccttcgcagatcaaattgttcggtttgaaaacaggt
gatactgtttgtggatctatccgcccaccaaaagaaggtgaaaaatacttcgctttgttg
cgtgtagaaactgtaaacggcaaaactaccgaagaaattcgtgaccgtgtaccattcgaa
cacttgacgcctttgttcccacaggaaaagttgaacttggtagatcaaaccaacaaatac
tctacccgagtattggatttgtttgcacctatcggtaaaggtcagcgtggtatgatcgtg
gcacagccaaaaacaggtaagacggtattgttgaaagatatcgccaactcgatcgccaaa
aatcaccctgaggtttatttgatcatcttgttgatcgatgaacgtcctgaggaggttact
gatatggcgcgttcggttcgtgcagaagtagtatcctctacttttgatgagcaggcagaa
cgccacgtgaaggtatcgaatatggtcttggagaaatccaaacgtatggtagagtgtggt
catgatgtagtaatccttttggattctatcactcgtttggcacgtgcgcacaacaccgtt
gttccttcatcaggtaaaatcttgtctggtggtgtggatgctaacgcattgcacaaacct
aagcgtttcttcggagcggcacgtaatgtagaaaatggtggttcattgaccatcgttgcg
acagccctgacagaaacaggttcaaaaatggatgaggtaatctttgaagaattcaaaggt
acaggtaatatggaacttcagttggatcgtaaattggccaaccgtcgcgtttaccctgct
attgatattctttcttcaggtacacgccgtgaggatctattgactgaccgcgattcccta
caaaaagtatggttgctgcgtaagcatggtttgtcggatatgaactcgcaagaagcgatg
gaatggatgttggagaaaatgagaggcaccaaagacaatgaggaattcctgttgtcgatg
aatggttaa
DBGET
integrated database retrieval system
