Persicobacter psychrovividus: PEPS_27840
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Entry
PEPS_27840 CDS
T09740
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppsv
Persicobacter psychrovividus
Brite
KEGG Orthology (KO) [BR:
ppsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsv03400
]
PEPS_27840 (sbcC)
DNA repair and recombination proteins [BR:
ppsv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PEPS_27840 (sbcC)
Archaeal homologous recombinant proteins
PEPS_27840 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
ABC_tran
GTP_EFTU
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDD00504
LinkDB
All DBs
Position
pPP1:complement(87021..90575)
Genome browser
AA seq
1184 aa
AA seq
DB search
MKINKIVIHNLNSLKGKHTIDFEGEELKQVDLLAIVGDTGAGKTTILDAVLLALFNKTPR
YNKSLSAKELEQSGGIVTRGESEAGVSIDFEIKKNGSIAYYRAKWSARKGKKGEAKHKIQ
AYHMEFSALGNLHSEEGEILAKGAESKVRPLIEEIVGLNYDQFIKGVMLSQGAFAKFLRA
NKKDRNALLEKITRSFDFREISKASYLKNKTLQDAILQLKQEKEAQKCLSAEEIILINEE
IERLQPQSVALEEEIKVLKEQLNNFKALKQKQAEKLQTDTAIQELTQECTAFAEEEQKLQ
NYEACLPYLADFEALKNKEDQLQEELKSLHDLSGAVEGLLMLKEQLKKEVEKRKQAHAEF
NKAFEEKLVLIQQTEVLDQQIKAHQSTLAHLEPNHQSAVKKQQAIQQKIVSLQEKSEKLQ
EQREQKQAWLEQFQQLEHLRNDLPFLENIKAQMADQQQAIESKLNTINSDKLVGKIKDAL
AKQQLADMIPEWISTTEKSCTELQEQLAYKWDEDTFKAQISLLEQAERLFKDQQQVEQEQ
QLCQQNIKLVLAEKVKTKAEHQQLTVQLKVHENEFDIAKKEYENTKLMHDQGVAYLRSKL
LPQEQCPVCGATDHPLADQPTDQSLISRAEKNVQLTEKQKVSTEKQLMDSEGRLKQAIFK
IEEYEKSLKSIGEKSQQIADEITKIKASNLTGTPLQSENIPSTIATVHTAKQQADMLKRY
ELMISELSEIKIYTDRITEAEGKIAQRIAPYQQLIPDADLSALTQHAQLFETNKEALNNL
SEACSIHRNDLQNAKEQLELNTAELTKSQVEIEQLNTVLKDLQQQRQTIFGDQETENEKQ
QWAAKQQASTTALQNEEQKLALNKQEIEQKQQLTIASREKQQRLKSSINALKEAFEQALA
KLKMSERSAFETVLKYKAQAEGWKAKREALHQENTRLKERLQGTEKNIRELQSKIGDQSI
APEKMDDLLQTKAEEHHHFTQEMANLKAKLNHNDSILSYSKSLDQKIKKQAENAKVWYIL
NELIGSAEGDKFNNYAQSLMLGILLEYANKYLNMLNKRYQFVGIPEHSNEDDLYIRDIEM
GNEIRAIKTLSGGETFLLALSMALGLSDMASQKVKIESLFIDEGFGTLDKATLEEVLATL
ENLQDKTGKKIIIISHVPELQERISTQIRLEKTGAGYSKLTIQH
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaataaaattgttattcataatctcaactccctgaagggaaagcataccatc
gattttgaaggtgaagagctgaagcaagtcgatttgttggccattgtgggagatacaggt
gcaggaaaaaccaccattctcgacgccgttttattggcgttgttcaataaaaccccacgc
tacaataaaagcctcagtgccaaagaacttgagcaaagtggcggaattgttacccgaggt
gaatctgaagctggggtaagtattgattttgaaatcaagaagaacggcagcatcgcctat
tatcgggcaaaatggtcggcaagaaaaggaaaaaaaggagaagccaagcataagattcag
gcctaccatatggagttttctgcgctcggcaatttacatagtgaagagggggaaatcctc
gccaaaggggcagaaagcaaagtccgaccattgatcgaagaaatcgtggggctgaattat
gatcagtttattaaaggagtgatgctctcgcagggcgcttttgccaaattcctgcgtgcc
aataaaaaggacagaaatgcgttgctggaaaaaatcacccgatcattcgattttagggaa
atttccaaggcttcgtatttaaagaataaaacgctgcaagacgccatccttcaactgaaa
caagaaaaggaggctcaaaaatgtctgagtgcggaagaaatcattttgataaatgaagaa
attgagcgtcttcaacctcaatcagtggctttggaagaagaaattaaggtgctgaaagag
cagctgaacaatttcaaggcactgaagcagaaacaggctgaaaagctacaaaccgacacc
gcaattcaggaactgacacaggaatgtactgcatttgcggaggaggaacagaaacttcaa
aattacgaggcttgtctgccctacttggcagattttgaagccctgaaaaacaaagaagat
caactgcaggaagaattaaaaagcctccacgatttatcgggtgctgtggaaggtttattg
atgctgaaggagcaattgaaaaaggaagttgaaaaaagaaagcaagcgcatgctgaattc
aataaggctttcgaggagaaattggtacttatccaacaaaccgaagtacttgatcagcag
ataaaagcacaccaaagtacccttgcccaccttgagccaaaccatcaatcggcggtcaaa
aaacagcaggcaatccaacaaaaaattgtgtccctgcaggagaaatccgaaaagttgcag
gaacaacgcgaacaaaagcaagcttggctcgagcagtttcaacagctcgaacatttgcgt
aacgacctgccatttctcgaaaatatcaaggcacagatggctgatcagcaacaggcgatt
gaaagcaagctgaacacgatcaacagcgacaaactggtgggcaaaattaaggatgccctt
gcgaaacaacaacttgcggacatgattcctgagtggatttcaacaactgaaaaaagctgt
actgaacttcaggagcaattggcctataaatgggatgaggacacctttaaggcacaaatc
tcattgctggaacaagctgaaagattatttaaagaccagcaacaggttgagcaagaacaa
cagctttgtcagcaaaatattaaattggtactggcggagaaagtgaaaaccaaggccgag
catcagcaattgacggtgcaattgaaggtacatgaaaacgaatttgacattgcaaaaaag
gagtatgaaaataccaaattgatgcatgatcagggcgtggcgtacctacggtcaaaactt
ctaccgcaggagcagtgccctgtttgcggcgcaacggatcacccacttgctgaccaacct
accgatcagtcattgatcagcagggcggaaaaaaatgttcaactaacagaaaagcaaaaa
gtatcgactgaaaagcaattaatggattcggaaggccgcctcaagcaagcgattttcaaa
attgaagaatatgaaaaatccctgaagagcatcggtgagaaatcgcagcagatcgctgat
gaaatcacaaaaattaaggcttccaatttaacgggcacaccgctacagtcagaaaatatt
ccatcgaccatagcgacagttcatactgcaaagcaacaggctgatatgctgaaacggtac
gagctcatgatcagtgaattgtcagaaataaaaatctatacggacagaatcacggaagct
gaaggaaaaatagcacagcgtattgccccttatcaacaactcattcccgatgccgacctc
tccgctttaacacagcatgcacagctttttgaaaccaataaagaggcgctaaacaacctt
tctgaagcttgctccattcatcgtaatgaccttcagaatgccaaagagcaacttgaattg
aacactgccgagctgacaaaatctcaggtggaaattgagcagttaaatactgtccttaaa
gacctgcaacaacagcgacaaaccatttttggcgatcaggaaacggaaaatgaaaagcag
cagtgggcagcaaaacagcaagccagcactaccgccttacaaaatgaggaacaaaaactc
gccctcaacaagcaggaaattgagcagaagcaacagctgaccatcgcgagcagggaaaag
caacaacgcctcaaatcgagcatcaatgcgctgaaggaagcatttgaacaggcattggca
aagctgaaaatgtcggaacggtcggcctttgaaaccgtcctgaagtataaagcacaagcc
gagggatggaaggccaaaagagaagccctgcatcaggaaaacaccaggctaaaggaacgt
ttacagggtactgaaaagaatattcgtgagttgcaaagcaagattggtgaccaaagtatt
gcgcctgaaaaaatggacgacctcctgcaaacaaaggccgaggaacaccaccattttacc
caggaaatggcaaacctgaaagccaagctcaatcacaacgactcgatattatcctattca
aagtcactcgatcagaaaatcaaaaaacaagcagaaaatgccaaggtttggtatattctc
aacgaactgattggcagtgctgaaggagataagtttaataattacgcccagtcgctgatg
ttgggaatactgcttgaatacgccaacaaatacctgaatatgctgaataaacgatatcag
tttgttggtattcctgagcatagcaacgaagatgatctctatatcagagatattgaaatg
ggcaatgagatcagggcgataaaaaccctctctggcggcgaaacttttcttttggcgctt
tctatggctttgggcttgtctgatatggcgagtcaaaaagtgaaaattgaaagcctattt
atagatgagggattcggtacgctcgataaagccacccttgaggaggtcctcgccacgctt
gaaaaccttcaggacaaaactggaaagaagatcatcatcatttcccacgtacctgagcta
caggaacgaataagcacccaaatccgtttggaaaaaacaggtgcaggatattctaaactg
accatccaacactaa
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