Persicobacter psychrovividus: PEPS_33230
Help
Entry
PEPS_33230 CDS
T09740
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppsv
Persicobacter psychrovividus
Pathway
ppsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PEPS_33230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsv03019
]
PEPS_33230
03009 Ribosome biogenesis [BR:
ppsv03009
]
PEPS_33230
Enzymes [BR:
ppsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PEPS_33230
Messenger RNA biogenesis [BR:
ppsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PEPS_33230
Ribosome biogenesis [BR:
ppsv03009
]
Prokaryotic type
rRNA helicases
PEPS_33230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
IntS14_b-barrel
CMS1
UvrD-helicase
Helicase_RecD
Topoisom_I_N
Motif
Other DBs
NCBI-ProteinID:
BDD01043
LinkDB
All DBs
Position
pPP1:complement(895416..897158)
Genome browser
AA seq
580 aa
AA seq
DB search
MQNFQETGLRNELLDAITEMGFETPSPIQSKTIPHILSTDQDLVALAQTGTGKTAAFGLP
ILHRIDPKSKNAQLLILSPTRELCIQIATEMERFLKYMGDVKVVSVYGGAPIDSQIRAIK
RGAQVIVGTPGRTIDLLNRRVLNFSNINWLVLDEADEMLNMGFKEDLNTILSSTSDERQT
LLFSATMPKEIQNIADNYMTNPLTIKMGKRNVASDDVKHFYYLVHGSDRYETIKRVADMN
PDIYGIIFSRTRAEAKDIAEKLQADGYNADALHGELSQGQRDQVMNRFRNKQLKLLVATD
VAARGLDVNELTHVINYNLPDDSEVYVHRSGRTGRAGNKGISVAIVSNRDVNRIKDIERF
IGKKFEKQLVPGGDEVCKARLFSLMSRVENVDINEEQIAPFMEEITAQFAEMSREELIKH
FVSVEFNQILSYYKNARDLNIQERKQRDRRDKENSKFTRFYINLGEENEGFNKLKMIGMI
NDNLPKRKVEIGKIDILQKFSFFEVDSNYENDVLDAFSNLNFGESKVLVEKKKGKERSGG
FKGNRRGGSGGGFRGNRRSGGGGGGSYPRNGEGRKPRYRG
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcagaattttcaagaaacagggcttcggaatgaacttttggatgccatcacggaaatg
ggtttcgaaacaccttctccgattcaatccaaaaccattcctcatatcctgtcaacggat
caggatttagtagccttggcgcagaccggaacgggtaaaactgcggcttttggattgcca
attcttcaccgaattgatccaaaatcgaaaaatgctcagttattgattctttctcctact
cgcgaactatgtattcagatcgctacggaaatggaacgattcctgaagtatatgggagac
gttaaagtagtttcagtttatggtggtgcaccaatcgactctcaaatcagagcgatcaaa
cgtggagctcaagttatcgttggtacgcctggacgtacaattgacttacttaaccgacgt
gttctcaacttctctaatatcaactggttggtattggatgaggctgatgaaatgctgaac
atgggtttcaaggaagacttgaacaccatcctttcttctacatctgacgaacgtcagaca
ttgttgttctctgcaacaatgccgaaagagatccaaaacatcgcagacaactacatgacc
aacccattgactatcaaaatgggaaaaagaaatgtagcttcagatgacgtaaagcacttt
tattatttggttcacggaagtgaccgctatgagactatcaagcgtgttgcggatatgaac
ccagatatttacgggattatcttctcaagaactcgtgcagaggctaaagacattgcagaa
aaattgcaagctgacggctacaacgcagatgctcttcatggagaactatctcaaggacag
cgtgatcaggtaatgaaccgcttccgtaacaaacaacttaaattgttggttgcaaccgat
gttgctgcccgtgggttggatgttaatgaattgacacacgttattaactataatcttcct
gatgatagcgaagtatatgtacaccgttctggtcgtacaggtcgcgcaggaaacaagggg
atttcagtagcgatcgtttcaaaccgtgatgtgaaccgtatcaaagatatcgagcgtttc
attggtaagaaattcgaaaagcaattggttcctggtggtgatgaagtttgtaaagcccgt
cttttcagcttaatgtcacgtgttgaaaatgtagacatcaacgaagaacaaatcgctcct
ttcatggaagaaatcacagcacaatttgctgagatgagccgtgaagagttgatcaaacac
tttgtttctgttgaattcaaccaaatcctttcttattacaaaaacgcccgtgacctgaac
attcaggagcgcaagcaacgcgatcgtcgtgataaggaaaacagcaagtttacgcgtttc
tacatcaacttaggtgaagaaaacgaaggcttcaataaattaaaaatgatcggtatgatc
aatgacaacttgccgaaacgcaaagttgaaattggtaaaatcgacatccttcagaaattc
tctttctttgaagtagattccaattacgaaaacgacgttttggatgccttcagcaacctt
aacttcggcgaaagcaaagtattggtagagaagaaaaaaggcaaagaacgcagtggtggt
ttcaaaggaaaccgtcgtggcggcagtggcggaggattccgtggcaatcgtcgtagtggc
ggtggcggaggaggctcttacccacgcaatggcgaaggcagaaaaccaagatatagagga
tag
DBGET
integrated database retrieval system
