KEGG   Pseudomonas versuta: AOC04_02805
Entry
AOC04_02805       CDS       T04081                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppsy  Pseudomonas versuta
Pathway
ppsy02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ppsy00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AOC04_02805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppsy03021]
    AOC04_02805
Transcription machinery [BR:ppsy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AOC04_02805
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_ECF Sigma70_r4 HTH_28 HTH_23 PhyR_sigma-like HTH_29 GerE HTH_11 Phage_NinH HTH_40 Terminase_5 Phage_antitermQ FaeA DUF3080 HTH_24 TnsD HTH_Tnp_ISL3 DUF722
Other DBs
NCBI-ProteinID: ALE87217
UniProt: A0ABX3EF30
LinkDB
Position
complement(599498..600016)
AA seq 172 aa
MSTGEPAFQAAISNLYCEHHGWLFGWLRRKLGCARNAEDLAQDTFTRILNARESVATLRE
PRAFLSTTARRLIIDQVRRKHIENAYLQELALTAHALEGFQSPEQILTTLEALEHIAFIL
EGMQDKVRQAFVLYYLDGLKQSEIARQLALSDRTVRKYLMQALLHCSHSLDT
NT seq 519 nt   +upstreamnt  +downstreamnt
atgtctacgggtgaacctgcgttccaggccgcgatttccaatctgtactgcgagcatcac
ggctggctgtttggctggctgcgaagaaaactcggctgcgcccggaatgccgaagacctg
gcacaagacacctttacccgaattctcaacgcccgcgagtcggtcgccaccctgcgcgag
ccccgggcgtttttgagcacgaccgcacgccgccttatcattgatcaggtgcggcgcaaa
cacatcgaaaacgcctacctgcaagaacttgcgctgaccgcacacgccctcgaaggcttt
caatcacccgagcagatcctcaccacgctggaagcactcgaacacatcgcgttcattctg
gaaggtatgcaggacaaggttcgccaggcctttgtcctgtattacctcgatggcttgaaa
cagagcgagatcgcccggcaactggcgctgtctgatcgtacggtgcgcaagtacctgatg
caggctttgctgcactgcagccatagcctggacacctga

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