Pseudomonas versuta: AOC04_03585
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Entry
AOC04_03585 CDS
T04081
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppsy
Pseudomonas versuta
Pathway
ppsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC04_03585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsy03019
]
AOC04_03585
03009 Ribosome biogenesis [BR:
ppsy03009
]
AOC04_03585
Enzymes [BR:
ppsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOC04_03585
Messenger RNA biogenesis [BR:
ppsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOC04_03585
Ribosome biogenesis [BR:
ppsy03009
]
Prokaryotic type
rRNA helicases
AOC04_03585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
ALE87354
UniProt:
A0A0M4Q7U8
LinkDB
All DBs
Position
761615..763288
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AA seq
557 aa
AA seq
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MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEAIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLTPLVADAESTHGDLLDRLIADIGCSPRAL
AAALLRKATNGQALTLAAIERDRPLVPNSAPRERSSERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEVGLESLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaacattcttgcagct
gtcattgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatt
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gctctgccgatcctgcatcgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacttatgccaagcaa
atgcctggcgttaccgttgtggccgtttacggcggcgcccctatgggtccacaactgaaa
gcaatccgtaatggcgcacagattgttgtcgccactccgggccgtctgtgcgaccacttg
cgtcgtgacgaaaaagtattggcaaccgtgaaccacctggttctcgacgaagctgacgaa
atgctcaagctgggcttcatggatgaccttgaagcgatcttcaaggctttgcctgctacc
cgtcagaccgtattgttctcggctaccctgccgcagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtaaaaatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtcgaagatttcgacgccctgatcatgttcgtacgtaccaagcaagcgaccctggat
ctggcaagtgccctggaagccaaaggctataaagctgctgcgctgaacggtgacattgcc
cagaaccaacgtgagcgcgttatcgaatccctcaaggatggccgtctggacatcgttgta
gcgaccgacgtagcggctcgtggtcttgatgttccacgtatcactcacgtgttcaacgtt
gacatgccttacgatccagagtcttacgttcaccgtatcggccgtaccggccgtgcaggt
cgcgaaggtcgcgcgctgttgctggtaactcctcgtgagcgccgcatgctgcaagtgatc
gagcgcgtaaccggtcaaaaggttgctgaagtccgcctgccggatgcccaagctgttctc
gatgcccgcatcaagaagttgaccaacagcctgacgccactggttgctgacgctgaatcg
actcacggtgatctgctggatcgcctgattgccgatatcggttgcagcccgcgtgctctg
gccgctgctctgttgcgcaaagctaccaacggtcaggctctgacgttggctgcgatcgaa
cgcgaccgtccactggtgccgaacagcgcaccgcgtgagcgttcgtccgagcgtactggc
gaccgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggccgaaggccgt
gcacgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagcaatcggtcgcattcaggtgcgtgac
agcttcagcctggtagagctgccggaagtaggtctggaaagtttgctggccaaactcaaa
gacacccgcgttgccggcaagcagctcaagctgcgtcgctaccgcgaagattaa
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