Pseudomonas versuta: AOC04_08380
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Entry
AOC04_08380 CDS
T04081
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppsy
Pseudomonas versuta
Pathway
ppsy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AOC04_08380
09124 Replication and repair
03420 Nucleotide excision repair
AOC04_08380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsy03021
]
AOC04_08380
03036 Chromosome and associated proteins [BR:
ppsy03036
]
AOC04_08380
03400 DNA repair and recombination proteins [BR:
ppsy03400
]
AOC04_08380
Enzymes [BR:
ppsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
AOC04_08380
Transcription machinery [BR:
ppsy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AOC04_08380
Chromosome and associated proteins [BR:
ppsy03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
AOC04_08380
DNA repair and recombination proteins [BR:
ppsy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AOC04_08380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ALE88215
LinkDB
All DBs
Position
1877676..1879928
Genome browser
AA seq
750 aa
AA seq
DB search
MSYRVAVRALCEFTAKAGDLDLRFTPSPTAQQGIAGHRTVASRRSAGYQAELSLEGEFGA
LTVRGRADGYDPAANVLEEVKTYRGDFTAIPANHRHLHWAQARVYGWLLCQSLQLPEVNL
ALVYFDIVSEQETRLQETWSAARLQAFFNQQCTLFLTWADQEMAHRQARDAAARTMAFPH
AQFRTGQRALAEAVYKTASGGRCLMAQAPTGIGKTIGTLFPLLKAMPARQLDKLLFLTAK
TPGRKLALDAARVLYPQAANTPLRVLELVARDKACEYPQNACNGDSCPLAKGFYDRLPAA
RLAAVAHSPLDQQTLRDVALAHQVCPYYLSQEMARWADLVIADYNYYFDFTALLYGLAQA
NQWRVATLVDEAHNLVERARQMYSASLDQQTLNSVRQDAPAALDKVFKRLNREWNALHKE
QVGPYQVHGQLPAKWLNALAGCITAIGDYLNDHPQGLAGNLQGFYFDALQFNRVAELFDP
HFLFDVSLTESGKKRLSQLNLRNIVPAPFIGPRLASAQSNVLFSATLSPRTYYTHLLGLP
TDAVWIDVESPFHARQLAVHVVSRISTRFVHRQASLEPIVELIATQFAQRPGNYLAFFSS
FDYLQQVAGLLAERYPHLPQWAQSRRMDEAARQGFLDQFTLTGQGIGFAVLGGAFGEGID
LPGARLIGAFVATLGLAQLNPVNEQIKQRMAALFGAGYDYTYLYPGLQKVVQAAGRVIRT
QDDQGTLFLIDDRFAEAKVQQLFPRWWQLG
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
ttgagctatcgcgttgcagtccgtgccttgtgcgagttcacggccaaggccggcgacctg
gatttgcgcttcaccccgtcgcctacggcccagcaggggattgccgggcaccgcaccgta
gcttcccggcgcagtgccgggtatcaggccgagttgagcctggaaggtgagttcggtgcc
ttgaccgtgcggggcagggcggacggctatgacccggcggccaatgttctggaggaagtc
aaaacctatcgcggcgatttcacggcgataccggccaatcaccgccacttgcactgggct
caggcccgggtctacggctggctgttgtgtcaaagcctgcagttgcccgaggtcaacctg
gcgctggtgtatttcgatatcgtcagcgagcaggaaacccggctgcaggaaacctggagc
gctgcccggctgcaggcgttcttcaatcagcaatgcacgttgtttttgacctgggccgat
caggaaatggcccatcgtcaggcgcgggatgcggctgcacgcaccatggcgttcccccac
gcgcagttccgtaccgggcaaagggccctggccgaagcggtatacaagacggccagcggc
ggtcgctgcctgatggcccaggcgcccaccgggattggtaaaaccatcggcaccctgttc
cccttgctcaaggccatgcctgctcggcaactcgacaaattgctgtttttgacggccaag
acccctgggcgaaagttggctctggatgcggcccgggtgctctatccgcaagcagccaac
acacctttgcgggttctggaactggtggcccgcgacaaggcctgcgaatacccgcagaac
gcctgcaatggcgactcctgcccgctggccaagggcttttatgatcgcctgcccgccgcg
cggctggcggcggtcgcacattcgccactggaccagcagacgttgcgcgatgtcgcactg
gcgcatcaggtctgcccttactacctgagccaggagatggcgcgttgggcagacctggtc
attgccgattacaactattacttcgatttcaccgccttgctgtatggcctggcccaggcc
aaccagtggcgggtcgcgacgctggtggatgaagcgcacaacctggtggagcgcgcccgc
cagatgtacagcgccagccttgaccagcaaaccctcaacagcgtgcgtcaggacgccccg
gccgcgctggacaaggtgttcaagcgcctcaatcgggaatggaatgccctgcacaaggag
caggtcgggccttatcaggtacacgggcaattgccggccaaatggctcaatgccttggcg
ggctgtatcaccgccattggcgactacctcaacgatcacccccagggcctggccggcaat
ctgcaaggcttctactttgacgcactgcaattcaaccgcgtggcggagttgtttgatccg
cactttctgttcgacgtcagcctcactgaaagcggcaaaaaacgcctgtcacaactcaac
ctgcgcaatattgtgccggccccttttatcgggccacgactggccagcgcgcaaagcaat
gtgttgttttccgccaccctgagcccgcgcacgtattacacccacttgctggggttgccc
accgatgctgtgtggatcgatgtcgagtcaccgttccatgcccggcaactggcggtgcat
gtggtgagccggatatccacccggtttgtgcatcgccaggcctcgctggaacccatagtg
gagctgatcgccacacagtttgcgcagcgccccggcaactatctggcctttttcagcagc
tttgattacctgcaacaggtggccgggctgcttgccgaacgctacccgcacctaccgcag
tgggcgcagtcgcggcgtatggatgaagcggcgcgccaggggtttctcgatcaattcacg
ctcacgggccagggcataggttttgcggtgctgggcggggcgtttggtgaaggtatcgac
ttgcccggagcacggctgatcggcgcctttgtcgcgaccctggggctggcacagctgaat
ccggtcaatgagcagatcaaacagcgcatggccgcgctgtttggcgccggctatgactac
acctacctgtatccggggctgcaaaaagtggttcaggctgccgggcgggtgattcgcacc
caggacgatcaaggcacgctgtttctgattgacgaccgttttgcagaggccaaggtgcaa
cagctgttcccgcgttggtggcagttgggttga
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integrated database retrieval system
