Pseudomonas versuta: AOC04_18870
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Entry
AOC04_18870 CDS
T04081
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppsy
Pseudomonas versuta
Pathway
ppsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC04_18870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsy03019
]
AOC04_18870
03400 DNA repair and recombination proteins [BR:
ppsy03400
]
AOC04_18870
Enzymes [BR:
ppsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOC04_18870
Messenger RNA biogenesis [BR:
ppsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOC04_18870
DNA repair and recombination proteins [BR:
ppsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AOC04_18870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
PorA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALE90118
LinkDB
All DBs
Position
complement(4224054..4226015)
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AA seq
653 aa
AA seq
DB search
MHNTLEQVFGYPQFRAGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIAAASIDSAQSRDDASAVMARAKAGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPNVIADM
QAKFAIAEEDVITTGFYRANLNLWVEPVTGAAKRQRLVQWMGERIGQPSIVYVTLQKTAE
QIAAHLNQNGISANAYHAGLPHDQREGIQRQFMGGQLNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELQGIRCVLEELR
ASIPEGQWEFLLGPLADQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKFLIEPDAL
LARFEGERQQFVSAIIQTSSRARTWATVNFDTLYSQHRADRNRVVKALDYFQEKGWIELE
SKQMTEVYSLLVTDFDAEALSLELHEYFTAHERGEIVRIHAMLALFASDTCLSYRLAHYF
GDEQAPHQCGHCSVCAGQVAHLPEPPMLAPLVDKNFEALCSAFIHRHQEFTASYPPQERL
TRFLCGISVPLFTKMKARAIPGFAALENYPYAEVREWAAQHQGTGYGSVQELA
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggaacaggttttcggttatccacagtttcgtgccgggcaagaggcg
gcgatcagtgccgtgctggccgggcgttcggcggccgcgattttcccgacgggctcgggc
aagtcgctgtgctaccagcttcccgccttgttgttgccgcacctgacgctggtggtatcg
cccctgctggcgctgatgcaggaccagctggcgtttttgcaacgccatggcattgcagcc
gccagcattgactcggcgcagagccgtgatgacgccagcgccgtcatggcccgggccaag
gcgggtgaattgaaaatcctgatgatttcggtggagcgcctgaagaacgagcgttttcga
aactttttgcagcaggtgccgatttcattgctggtggtggacgaggcgcactgtatttcc
gagtgggggcataacttccgaccggactacctgaagctcccggactaccagcgccagttc
aacatcccgcaagccttactactcacagcaacggccacgcccaacgtgattgccgacatg
caggccaaatttgcgattgccgaggaggatgtcatcaccaccggcttctatcgcgccaac
ctcaacctgtgggtcgagccggtcaccggggccgccaagcgccagcgtctggtgcaatgg
atgggtgaacgcatcggccagccgagcattgtgtatgtcacattgcaaaagaccgccgag
cagatcgccgcgcatctgaaccagaacggaatcagcgccaacgcttatcacgccggtttg
ccccacgatcagcgcgagggcattcagcgtcagttcatgggcgggcaattgaattgcatc
gtcgccaccattgcctttggcatgggcatcgataaaagcgacatccgtaatgtggtgcac
ttcgacttgcccaagtcgatcgaaaactacagtcaggaaatcggtcgtgccgggcgcgat
ggccagccatcggactgtctggtcctggccaatcgtgacagtctcaacgtgctggaaaat
tttgtgtacggcgacacacccgagttgcagggcattcgctgtgtgttggaagaactgcgt
gcctccatccctgaagggcagtgggaattcttgcttgggcctttggccgatcagagcaat
atccgtcagttaccgcttaagacgctgctggtgcagctggaattgcgtggcctgattgca
ccgcgctatgcctattttgccgagtatcgattcaagttcctcattgagcccgatgcactg
ctggccagattcgagggcgagcgccagcagtttgtctcggccatcatccagacctccagt
cgcgcccggacctgggccacggtcaatttcgacacgctgtacagccagcaccgggccgac
cgtaaccgggtggtcaaagcactggattactttcaggaaaaaggctggatcgagcttgaa
agcaagcagatgaccgaggtctacagcctgctggtgacagatttcgatgccgaggcgctg
agcctggaattgcatgagtatttcacggcccatgagcgcggcgagatcgtgcgcattcac
gccatgctggcattgttcgccagcgacacctgcctgagttatcgcctggcgcactacttc
ggcgacgaacaggcgccacatcagtgcgggcattgttcggtgtgtgccgggcaggttgcg
cacttgcctgagccccccatgctggcgccgcttgtggataaaaacttcgaagcgctgtgt
agtgcttttatccacaggcaccaggaattcaccgcaagttatcccccgcaggaacgcctg
acccggtttttatgcgggatcagcgtgccgttgtttacaaagatgaaagcgcgggcgatt
ccggggtttgcggcgttggaaaactacccctacgccgaagtacgggaatgggccgcgcaa
catcaaggcacaggatatgggtcagtccaagagctcgcgtaa
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