Pseudomonas versuta: AOC04_22630
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Entry
AOC04_22630 CDS
T04081
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppsy
Pseudomonas versuta
Pathway
ppsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOC04_22630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppsy03021
]
AOC04_22630
03400 DNA repair and recombination proteins [BR:
ppsy03400
]
AOC04_22630
Enzymes [BR:
ppsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOC04_22630
Transcription machinery [BR:
ppsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOC04_22630
DNA repair and recombination proteins [BR:
ppsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOC04_22630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
ALE90822
UniProt:
A0A0M4QK11
LinkDB
All DBs
Position
5043092..5047291
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFLGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVSGTRIVDTTVGRALLFQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIAAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVIDRHGVEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VGVDGKDLLLPGTDVPAQYFLPANALVGVADGAEIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSTFIKGDQMELTHVLVENERLGNEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaaa
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaaa
atctttggcccggttaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgcggtgtgatctgcgagaagtgtggcgttgaagtcgcactggccaaggtccgtcgcgag
cgcatggctcacatcgaactggcatcgccggttgctcacatctggttcctgaaatcgctg
ccgtcccgtatcggtttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccgggcatgaccactcttgagaaaggtcagctgctg
aacgatgagcagtacttcgaagcgctagaagagttcggcgacgactttgatgcccgtatg
ggtgctgaagctgtccgtgaactgctgcacgctatcgatctggaacacgagattggccgt
ctgcgcgaagaaattccgcaaaccaactccgaaaccaaaatcaagaaactgtccaagcgc
ctgaagttgatggaagccttcctgggctccggcaaccttcctgagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtcctttggttccgctggatggtggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgcctgcttgatctgtccgctccggacatcatcgtgcgtaacgaaaagcgtatgttgcaa
gaagcggtcgacgcattgctcgacaacggccgtcgtggtcgcgctatcactggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcgggtcgttcggtaattaccgtaggtccaacc
ctgcgtctgcaccagtgcggtctgccgaaaaaaatggctctcgagctgttcaagccgttc
atcttcggcaagcttgaaatgcgcggtctcgcgaccaccatcaaagcagccaagaaaatg
gttgagcgcgaattgccagaggtttgggacgttctcgcagaagtcattcgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgttggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtattcgcggatctgcaagaagttgaccgtgtattccgtgccggc
gaagccgcactgcatgccaaggttaaagtgcggatcaacgaaaccgtcaatgaccgtgat
ggtggcagcgtgagcggcacccgtatcgtcgacactactgtcggccgtgcgctgttgttc
caggttgtgcctaaaggtctgtcgtacgatgtcgtcaacctgccgatgaagaaaaaggcg
atctccaaactgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgattttc
gctgaccagttgatgtacaccggttttgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatccctgatgaaaaagcccgcatcatcgcggctgcaaccgatgaa
gtgaaagagatcgaaagtcagtacgcctcgggcctggtaacacagggcgagaagtacaac
aaagtaatcgacctttggtcgaaagctaacgacgaagtctccaaggcaatgatgtcgaac
ctctcgaaagagaaggttattgaccgtcacggcgttgaggttgagcaagagtcgttcaac
tcgatgtacatgatggccgactccggcgcacggggttctgcagcgcagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggatggctccatcattgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctctactcacggtgctcgt
aagggtctggcggataccgccttgaaaactgctaactccggttacttgacgcgtcgtctg
gtagacgttgcgcaggatctggttgtgactgaagtcgactgcgggaccgaacacggtctg
ctgatgactccgcacattgaaggcggtgacgttgttgagccgttgggtgagcgcgtactg
ggtcgagtaatcgcccgtgacgtattcaagccgggtaccgatgaaatcatcgttcctgct
ggcaccctggtcgacgagaagtgggttgaattcatcgagctgaacagcattgacgaagta
atcgtacgctcgccaatcagctgcgaaacccgcttcggtatctgtgccaagtgctacggt
cgcgatctggcccgtggtcaccaggtgaacatcggtgaagctgtcggcgtaatcgctgcc
cagtcgatcggtgagccgggtacacagctgaccatgcgtacgttccacattggtggtgcg
gctagccggacctctgctgctgacagcgttcaggtgaagaatggcggtactgtccgtctg
cacaacctgaagcacgttgagcgggtagatggttgcctggtagcagtatcccgttccggt
gagctggccatcgctgatgactacggtcgtgagcgcgagcgctacaagctgccgtacggt
gccgtgatttcggtcaaagaaggtgacaaggtcgacgctggctctatcgtcgccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtgcttgatgccaaagaccgtccagctgccggcaaggacattcgtccagccgtcaagatg
gttggtgttgatggcaaggacctgctgttgccaggtaccgacgtaccggctcagtacttc
ctgccggcgaacgccctggtcggtgtagcggatggtgcggaaatcgcgatcggtgacgtt
atcgctcgtattccgcaagaaacttcgaaaactcgagacatcaccggtggtctgccacgg
gttgctgacttgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattactccgaac
gacggtactgatccgtacgaagagctgattccaaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtttgctgggtgtgagtgcgttggccaagtacatcgttaacgaaattcaagacgtt
taccgtctgcaaggcgtaaaaatcaacgataagcacatcgagacgattcttcgtcagatg
ctgcgtaaagttgagattgccgagtctggcgattccaccttcatcaagggcgaccagatg
gagttgacgcatgtactggtcgagaacgagcgcctgggcaacgaagataaattcgtgtcc
aagttcactcgcgttctgttgggtatcaccaaggcgtcgttgtcgactgagtcgtttatc
tccgcggcctctttccaagagactacccgcgtactgaccgaagcagcggttaccggcaag
cgcgattacctgcgtggcctgaaagaaaacgtggtcgtgggtcgtttgatcccggctggt
accggtctggcataccacagcgagcgcaagcgtcgtcgtgaggctgacaaaccgttgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcactgaactcgagcggtaactga
DBGET
integrated database retrieval system
