Pseudomonas putida S16: PPS_0554
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Entry
PPS_0554 CDS
T01570
Name
(GenBank) GAF modulated sigma54 specific Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppt
Pseudomonas putida S16
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppt03000
]
PPS_0554
Transcription factors [BR:
ppt03000
]
Prokaryotic type
Helix-turn-helix
Other families
PPS_0554
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
HTH_23
HTH_17
HTH_30
AAA_2
AAA_5
HTH_29
AbiEi_4
HTH_50
HVO_A0261_N
AAA_16
HTH_28
HTH_22
RWP-RK
HTH_7
HTH_32
IclR_C
Motif
Other DBs
NCBI-ProteinID:
AEJ11139
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Position
631444..633252
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AA seq
602 aa
AA seq
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MLKNADRLPQAPVPPLILDSWRRSMELYRLDPGSQQGPRILSQSLLNECRERAELFLRIA
SDAVARLHERVRGADYCVLLTDALGRTIDYRVESAIRNDCRKAGLYLGTCWSEGEEGTCG
VAAVLTSKAPVTVHKRDHFRAAFIGLTCTAAPVFDPLGELLGVVDVSALQSPDDRRSQHL
IRQLVEQTAREIENAFFMHSAQGHWVMRAHGTPGYVESQPDYLLAWDGDGRLQAINSLAR
QRLVEHLGRLPEHIGELFDMDQLRRVNASSAQRLPGLGGLYGRVSAPRQRQRAQPLRQAQ
DARIEQHLRLATRVKDCNLAVLVQGETGAGKEVFARQLHQQSLRRDGPFVTLNCAAIPES
LIESELFGYVAGAFTGASSKGMQGLLQQADGGTLFLDEIGDMPLNLQTRLLRVLAEGEVA
PLGAARRERVDIQVICATHRDLAAMVEDGRFREDLYFRLANARFELPPLREREDRLGLIH
QLLAEEAEACGVEVVLADDALQALLVYRWPGNLRQLRQVLRYACAVSEDGRVQVQDLPQE
VRGEVVASAESSMSCPARQLLLDALIRHRWKPADAARALGISRATLYRRVHEHHIEMPRM
KG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaagaatgccgaccgcctgccgcaggcgccggtgccaccgctgatcctcgattca
tggcgccgttccatggagctgtaccgcctcgaccccgggtcccagcaggggccgcgcatc
ctgtcccaaagcctgctcaacgaatgccgcgagcgcgctgaactgttcctgcgcatcgcc
agcgatgccgtggcccgcctgcatgagcgggtgcgcggtgccgactactgcgtgctgctc
accgacgccttggggcgcaccatcgattaccgggtcgagtcggccatccgcaacgattgc
cgaaaggccgggctgtacctgggcacctgctggtcggagggcgaggagggcacctgcggc
gtggcggcggtgttgaccagcaaggcgccggtcacggtgcacaagcgcgaccacttccgc
gccgcgttcattggcctgacctgtacggcggcaccggtgttcgacccgctgggcgagttg
ctgggcgtggtggatgtctcggccttgcagtcgccggacgaccgccgcagccagcacctg
atccgccaattggtcgagcagactgcgcgcgagatcgaaaatgccttcttcatgcacagt
gcccagggccattgggtaatgcgtgcccatggcacgccgggctatgtggaaagccagccc
gactacctgctggcctgggatggcgatggccgcctgcaggcgatcaacagcctggcgcgc
cagcgcctggtggagcatctggggcgtttgcccgagcacattggcgagctgttcgacatg
gatcagttgcgccgcgtgaacgcatcgtccgctcaacgcctgccgggcctgggtggtctg
tacggccgggtcagcgcaccccgacagcgccagcgtgcgcagccgttgcgccaggcccag
gacgcccgtatcgagcagcatctgcgcctggccacgcgggtcaaggactgcaacctggcg
gtgcttgtgcaaggcgagacgggggctggcaaagaggtgttcgcccgccagctgcatcag
caaagcctgcgtcgcgatggcccgttcgtcaccttgaactgcgcggccatcccggaaagc
ctgatcgagagcgagctgttcggctatgtggccggggccttcaccggggcttccagcaaa
ggtatgcaggggctgttgcagcaggccgatggcggcacgctgttcctcgacgaaatcggt
gacatgccgctgaacctgcaaacccggttgctgcgcgtgctggcggagggtgaagtggcg
ccgctgggcgcggcgcggcgggagcgggtggatattcaggtgatttgcgcgacccaccgc
gatttggcggcgatggtggaggatgggcgttttcgtgaggacctgtacttccgcctggcc
aatgcccgcttcgagttgccgccgctgcgcgagcgtgaggaccgcttggggttgattcac
cagttgctggccgaggaagccgaggcctgcggagtcgaggtggtgttggcggatgatgcg
ctgcaggcgctgctggtttaccgctggccggggaatttgcgccagctgcggcaggtgttg
cgctatgcatgtgcggtgagcgaggacgggcgggtgcaggtgcaggacctgccgcaggag
gtgcgcggcgaggtagtcgcgtcggctgaaagcagcatgtcctgtccggcccggcagttg
ctgctggatgcgctgatccgccatcgctggaagccggccgatgcggcgcgggctctggga
atatcgcgggcaaccttgtaccggcgggtgcatgagcaccacatcgagatgccgcggatg
aaggggtag
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