Pseudomonas putida S16: PPS_1201
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Entry
PPS_1201 CDS
T01570
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03030
DNA replication
ppt03430
Mismatch repair
ppt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPS_1201
03430 Mismatch repair
PPS_1201
03440 Homologous recombination
PPS_1201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppt03032
]
PPS_1201
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_1201
Enzymes [BR:
ppt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPS_1201
DNA replication proteins [BR:
ppt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPS_1201
DNA repair and recombination proteins [BR:
ppt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPS_1201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
AEJ11776
LinkDB
All DBs
Position
1341009..1344533
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAAADPEAPLSRICFLAMNPKGYRNLTELISRGWTEGQRNGLVILQREWI
APASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMAMFPERFYVEVQRTNRARDEEY
VHAAVALADRFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRMYSDQQYLK
SAEEMTELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHH
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMFEEADADVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRDTQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaagccgctggccaaggcgctggccgggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtaaagttctacaagactgccatgggcgcgggc
atcaagccgatctgcggcgccgacctgtggctggccgctgccgacccggaagcaccgctg
tcgcgtatctgcttcctggccatgaaccccaaggggtaccgcaacctcaccgagctgatc
tcgcgcggctggaccgagggccagcgcaacggcctggtgatccttcagcgtgaatggatc
gccccggccagcgagggcttgatcgccctgtccgcaggcaaggaaggtgacatcggcatg
gccttgctggcggggcggcaagatgaagccgaggccctgctgcaggactggatggcgatg
ttccccgagcgcttctatgtcgaggtgcagcgcaccaaccgcgcccgcgacgaggaatat
gtgcacgccgccgtggccttggccgacaggttcggcgctccgctggtggcaaccaacgat
gtgcgtttcatcaagcaatcggacttcgatgctcacgaaacccgcgtatgcatcggtgag
ggctggaccctcgacgatccgcgccggccaaggatgtacagcgaccagcagtacctgaag
tcggccgaagaaatgaccgaactgttcagcgacctgcccgacgccattgccaacaccgtc
gagattgccaagcgttgcaacatccaggtgcagttgggcaagtacttcctgcccgacttc
cccacgcccaatggcatgggcatcgatgactacctgcggcatgtgtcccacgaaggcctg
gaagagcgcctggcagtgctgtggccgaaagagaccacgcccaactacgaagagaagcgc
caggtttacctggaccgcctgaagttcgaactggacatcatcatccagatgggcttcccc
ggttacttcctgatcgtgatggacttcatcaagtgggccaagaacaacggtgtgcctgtc
ggcccgggccgggggtcgggtgctggctcgctggtggcctatgtactgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgagcgcttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggatggccgtgaccgggtgatcgactatgtg
gccgaagcctatggccgcaacgcggtcagccagatcatcaccttcggtaccatggcggcg
aaggcggtggtgcgggacgtggcgcgggtacagggcaagtcatacggtctagccgaccgc
ctgtcgaagatgatcccgttcgaagtgggcatgaccctggaaaaggcctacgagcaggaa
gagatcctgcgcgacttcctcaagggtgacgaagacgcccgcgaaatctgggacatggcc
ctgaagctcgagggcgtgacacgcggtaccggcaagcacgccggtggtgtggtcatcgcc
ccgaccaagctcaccgacttctcgccgatcgcctgtgatgaagagggcggcggcctggta
acccagttcgacaaggatgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcggaccctgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgatgtaaacatcgacttcatcccgctggacgaccgcaagacctacgag
ctgttgcagaaggccgaaaccacggcggtgttccagcttgaatcgcggggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagaccttatcgcactggtggcgttgttc
cgcccaggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctcgcctacccccatccggactaccagtacgaaggcctgaagccggtgctggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtgatggct
ggctataccctcggcggcgccgacatgctgcgccgtgcgatgggtaagaagaagcccgag
gagatggccaagcagcgcggtggtttcatcgaaggttgtgccaacaacaatatcgatgca
gacctggctggtaacatcttcgacctggtggaaaagttcgccggttacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagaccgcgtggctgaaaacccaccac
ccggcgccgttcatggctgcggtgttgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtcgaggaagtgcgcagcatgaagctgcgcctcgacgcgcccgacgtgaacttc
tccgacttcaagttcaccgtcaacaatgacgggcgcatcgtctacggcctgggcgccatc
aagggcgtcggcgagggcccggtggaggcgatcgtcgaggcccgcgcccagggtggccca
ttcaaggacctgttcgacttctgtgagcgcatcgacctcaaacgggtcaacaagcgcacc
ctcgacgcgctgatccgcagtggtgcgctggaccgcctgggcccgcacttccatgacgag
atcaaggcctaccacgccaacatcgacatcaaccgtgcaaccctgctctcggcgctgggc
gaggcaatcaaggctgccgagcaggccgcccacaccgctgacagtgggcacgttgacctg
ttcggcggcatgttcgaagaggcggatgccgacgtctacgccaaccaccgcaaggtgcgc
gaactgaccctcaaggaacgcctgaagggcgaaaaagacacccttggcttgtacctcacc
ggccacccgatcgacgagtacgagaccgagatccgccgcttcgcccgccagcgcatcatc
gacctcaagccgtcacgcgatacccagaccatcgccggcatgatcattgcccttcgggtg
atgaagaacaagaagggtgacaagatgggcttcgtcaccctggatgaccgctccgggcgc
atcgaggcgtcgctgtttgccgatgccttcatggcggcacagtccttgctgcagaccgat
gccatggtggttgtcgaaggcgaggtcagcaacgacgatttctccggtggcctgcgcctg
cgggtgaagcaggtgatgaccatggaagatgcgcgcaccaagctggccgagagcctgcgc
ctgaaggtggcacacgaagcgctcaagggcgaccggctgaagtggctgggcgagttgatt
acccgccatcgcggcgcttgcccgatcactctcgaatacaccggcagcgacgccaaggcc
atgctgcagttcggcgagcagtgggctatcgacccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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integrated database retrieval system
