Pseudomonas putida S16: PPS_2506
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Entry
PPS_2506 CDS
T01570
Name
(GenBank) DEAD_2 domain-containing protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PPS_2506
09124 Replication and repair
03420 Nucleotide excision repair
PPS_2506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppt03021
]
PPS_2506
03036 Chromosome and associated proteins [BR:
ppt03036
]
PPS_2506
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_2506
Enzymes [BR:
ppt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PPS_2506
Transcription machinery [BR:
ppt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PPS_2506
Chromosome and associated proteins [BR:
ppt03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PPS_2506
DNA repair and recombination proteins [BR:
ppt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PPS_2506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AEJ13065
LinkDB
All DBs
Position
2806181..2808442
Genome browser
AA seq
753 aa
AA seq
DB search
MSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHRRVVARRAAGYESEITLEGQFET
LKVRGRADGYDPTCNRLEEIKTHRGDLSRQPANHRQLHWAQAKVYGWLMCQARQLPDIEV
ALVYLDVDSDGQTLISEHCTAAELQAFFETQCQRFLAWAQEQEQRLAERNQGLQALGFPY
PAFRQGQRQLAETLYKAVSTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQLDKLFFLTAK
TPGRALALDAMRQITHATPQPALRTLELIARDKACEHPDKACHGESCPLAAGFYDRLPAA
RAAAAALPMLDRAQLREVALAHQVCPYYLGQEMARWVDVLVADYNYYFDAHALLFGLTQA
NQWRVAVLVDEAHNLVERGRGMYSASLDQGQLQALRQSKPPGLVSALDRLNRQWNALYKE
QRAPYQASESLPDALLRALQQCIGLIQEKMNQAPAQMDPQVLQFFYQALQFSRVAELFDE
HFLFDISQRQGPRKRRLATLCLRNVTPARLLGPRMRAARSVTLFSATLSPRHFYSDLLGM
PVDTAWLEVAAPFRAEQLEVRIASHVSTRYQQRQASLAPIVELIARQYERMPGNYLAFFS
SFEYLQQVAGLLAERHPQIPMWAQEPGMDEAARQGFLDRFVADGRGVGFAVLGGAFGEGV
DLPGTRLIGAFVATLGLPQVNPVNEQFKQRLGRQFGAGFDYAYLYPGVRKVIQAAGRVIR
GDQDRGVLVLIDERFAEPRVQQMFPGWWPAPGG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ttgagctatagcgtggcggtacgggccttgtgcgagttcagcgccaaggtaggcgacctg
gacctgcgcttcaccccatcacccaccgctcaggaggggatcgaagggcatcggcgcgtg
gtggcgcgacgcgccgcgggctacgagtcggaaattaccctcgaaggccagttcgaaacc
ctgaaagtgcgtggccgcgccgacggttacgaccccacctgcaaccgcctggaagagatc
aagacccaccgtggcgacctgtcgcgccagccggccaaccatcgccagttgcactgggcg
caggccaaggtctatggctggttgatgtgccaggctcggcaactgccggacatcgaggtg
gcgctggtgtacctggacgtggacagcgatggccagacgctgatcagtgaacactgcacg
gcagccgaactgcaggccttcttcgaaacccagtgccaacgctttctggcttgggcacaa
gagcaggagcagcgcctggccgagcgtaaccagggcctgcaagcgctgggcttcccctat
ccggcgttccgccagggccagcgacaactggcggaaaccctgtacaaggccgtgagtacc
ggccgttgcctgatggcccaggccagtaccggaattggcaagaccctcggtaccttgttc
cccctgctcaaggccatggtgccgcagcaactggacaagctgttctttctcaccgccaag
accccgggccgggccctggccctggatgccatgcgccagatcacccatgccacgccgcag
ccggccttgcgcacgctggagctgatcgcccgcgacaaagcctgcgagcaccccgacaag
gcctgccatggcgaatcctgccccttggccgcaggcttctacgaccgcctgccggccgcg
cgcgctgcggcggcagcgttgcccatgcttgaccgcgcccagctgcgcgaagtggcattg
gcgcaccaggtatgcccgtattacctgggccaggagatggcgcgctgggtagacgtgctg
gtggctgattacaactactacttcgatgcccatgccttgttgttcggcctgacccaggcc
aaccagtggcgggtcgcggtgctggtggatgaggcgcacaacctggtcgagcgcggccgc
ggcatgtacagcgccagcctcgaccaggggcagttgcaggccctgcgccagagcaaaccg
cctgggctggttagtgcgctggaccggctgaaccggcagtggaacgccctctacaaggag
cagcgcgcgccgtaccaggccagcgagtcgctgccagatgctttgctgcgtgccctgcag
caatgcatcgggctgatccaggaaaagatgaaccaggcacccgcgcaaatggacccgcag
gtgctgcagttcttctaccaggcgttgcagttcagccgggtcgccgagctgttcgacgag
cacttcctgttcgacatcagtcagcgccaagggccacgcaagcggcggctggcgaccctg
tgcctgcgcaatgtcaccccggcgcgtctgttgggcccacgcatgcgggcggcgcgcagc
gtgacgctgttctccgccaccctgagcccacggcatttctacagcgacctgctgggcatg
ccggtcgataccgcctggctggaagtggccgcgccgtttcgcgccgaacagctggaggtg
cgcattgccagccacgtatccacccgctaccagcaacgccaggcttcgctggcgccgatc
gtcgagctgattgcccggcagtacgagcggatgccgggtaattacctggcgttcttcagc
agtttcgagtacctgcaacaggtggccgggctgctggccgagcggcatccacagataccc
atgtgggcccaggaaccgggcatggacgaagcggcccgccagggctttctcgatcgcttt
gtggcggatggccgtggggtgggctttgcggtgctgggtggtgcattcggggagggggtg
gacttgccgggcacacggctgatcggcgcgtttgtcgccaccctcgggctaccccaggtc
aacccggtcaacgagcagttcaagcagcgcctggggcggcagtttggtgcggggttcgat
tacgcctatctctacccgggcgtgcgcaaggttatccaggcggcaggccgggtcatccgg
ggcgaccaggaccgtggagttctggtcttgatcgacgagcgcttcgccgaaccccgagtg
cagcagatgttcccggggtggtggccggcgccgggaggttaa
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integrated database retrieval system
