Pseudomonas putida S16: PPS_2947
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Entry
PPS_2947 CDS
T01570
Name
(GenBank) Fis family GAF modulated sigma54 specific transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
ppt
Pseudomonas putida S16
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppt03000
]
PPS_2947
Transcription factors [BR:
ppt03000
]
Prokaryotic type
Helix-turn-helix
Other families
PPS_2947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
AAA_lid_14
PAS_4
AAA_5
PAS_9
PAS
HTH_30
AAA_2
HTH_1
HTH_28
HTH_7
HTH_22
HTH_29
AAA
HTH_20
HTH_23
AAA_16
HTH_50
Mga
HTH_11
AAA_7
HTH_17
AAA_22
PAS_8
Motif
Other DBs
NCBI-ProteinID:
AEJ13496
LinkDB
All DBs
Position
complement(3299278..3301188)
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AA seq
636 aa
AA seq
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MARQLITNAHDPLHESRQARLKLASEGELPLGMLRDEIDASWRRSLGHGLDCLQGEQVGL
GLEQGHDLRMLLDRNRLLVDAVTPELDYLVARQGKAGIVILGDAQANVLAIEGQKHVLQR
EGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRGE
VIGVLDITREGVMAQPQDSLSTLMLAAGNIESRMFGLCHPEQLVLAFHSRPQYLNSAWHG
LLALSLDGEVLAANDSACQLLQVPRHELLGRRSSDLLGERSPAFIARLWQGGVSSVQTAK
GEFYFRALQLPRHGRVNGSTPVSKPAPGKQSPALDALAGGDPRLARNLRMARQGLGNGLP
VLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRG
GMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQEIDVALICATHR
DLKRLVQEQHFREDLYYRVNGVSLRLPALRERDDLAAIIQGLLDKSDARGVTLDPALNAL
LEGFDWPGNIRQLEMVVRTALAMREDGEQVLTLDHLTDCLLDELASGTAPSGSLKDKELE
LIRGALARHQGNVSAAAEALGISRATLYRKLKQLRG
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgacaactaataacaaacgcccacgacccgctgcacgaatcccgccaggcccgc
ctgaagctggccagcgaaggcgagctgccactgggcatgctgcgcgacgagatcgatgcc
tcctggcgccgcagcctgggccatggcctggattgcctgcagggcgagcaggtcggcctg
ggcctggagcagggccacgacctgcgcatgctgctggatcgcaaccgcctgctggtcgac
gccgttaccccggaactggactacctggtcgcgcgccagggcaaggccggtatcgttatc
ctcggcgacgcccaggccaacgtgctggccatcgaagggcagaagcacgtgctgcaacgc
gagggcctgcgcgacctgcacccgggtagttgctggagcgagtcgctgcgtggcaccaac
gcgatcggcacggcagtggtggaaggccggccgaccttgatcaactgcggcgaacattac
ctcgaccgcctcagcccgttctcctgcacttcggtacccctgcgcgacccgcgcggcgag
gtgatcggcgtgctcgacatcacccgtgaaggggtgatggcgcaaccacaggacagcctg
tcgacgctgatgctggcggccggcaacatcgaaagccgcatgttcggcctgtgccacccg
gagcaattggtgctggcttttcacagccgcccgcaatacctcaacagcgcctggcatggc
ctgctggcgctgagcctggacggtgaagtgctggctgccaacgacagtgcctgccagctg
ttgcaggtgccgcgccatgagctgttgggccggcgcagcagtgacctgctgggtgaacgg
tcaccggccttcatcgcccgcctgtggcagggcggggtgagcagtgtgcagacggccaag
ggcgagttctacttccgcgccctgcagctgccgcgccatggccgggtcaacggcagcacg
ccggtgagcaagccggcgccgggcaagcagtcacccgccctcgacgccctggccggtggc
gacccgcgcctggcgcgcaacctgcgcatggcccgccaggggctgggcaatggcctgccg
gtgctgttgctgggcgagaccggtaccggcaaggaagtcgtcgcccgggccctgcaccag
gccagcccgcgtgccgacaaaccgttcgtggccgtcaactgcgcggccatccccgaaggg
ctgatcgagtccgaactgttcggctaccgtgaaggtgcgttcaccggctcgcgccggggc
ggcatggtcggccggctgatgcaggcccacggcggcacgctgttcctcgacgaaatcggc
gacatgccgctagcgctgcaggcgcgcttgttgcgggtactgcaggaacggcgcgtggca
ccgctgggggcgggcgacgagcaggagatcgacgtggcattgatctgtgccacgcaccgc
gacctcaagcgcctggtgcaggagcagcacttccgcgaagacctttactaccgggtcaac
ggcgtgtcgctgcgcctgccggcattgcgcgagcgtgatgacctggcggcaatcatccag
gggctgctggacaagtccgatgcccggggcgtgaccttggacccggccctgaacgcgttg
ctcgaaggcttcgactggccgggcaacatccgccagctggaaatggtcgtgcgcaccgcg
ctggccatgcgcgaggacggcgagcaggtgctgaccctggaccacctcaccgactgcctg
ctggacgaactggccagcggcaccgcgccttccggcagcctcaaggacaaagagctggag
ctgatccgtggcgccttggcgcgccatcagggcaacgtgtccgcggcggccgaggcgctg
ggtatcagccgggcgacgctgtaccgcaagctcaaacagttgcgcggctga
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