Pseudomonas putida S16: PPS_3360
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Entry
PPS_3360 CDS
T01570
Name
(GenBank) pathogenesis-related protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03420
Nucleotide excision repair
ppt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPS_3360
03430 Mismatch repair
PPS_3360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_3360
Enzymes [BR:
ppt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPS_3360
DNA repair and recombination proteins [BR:
ppt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPS_3360
MMR (mismatch excision repair)
Other MMR factors
PPS_3360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AEJ13907
LinkDB
All DBs
Position
3761736..3763607
Genome browser
AA seq
623 aa
AA seq
DB search
MSIQREANMDEIPDADEVIQECLNLDRPKSFFLYAGAGSGKTHSLVMAVKNLKDREWQRL
TFEGRQIAIITYTNAACEEIARRLEYDPLVVVSTIHAFSWRMIQGFNDDIRDWLRVKLTA
DIDELNDKLGRAKGKNKTYLANEASRDSKSRRLNSLDEITTFTYSPTGDNRGRQALNHSE
VIQMAAAFIPRPPLLHVMTDLHPVLLIDESQDTYGPLMDAFLQAQALVPERFCLGLLGDM
MQRIYNDGKVRLEEAIPMDWAVPEKRINRRCPTRVVELINVIRKSADTHQQTPKPGAVSG
TVRMFCTQQTPGQGFGLEDDVAQRMAEITGDDQWAVGRTGRKTLILEHKMAGRRMGFEGV
FTPLYQVEHLRTGLLDGTLPILKLFFERVMPILQAAKTNDFSLMEAVRLHSPLLDPKSMK
VAPDQLALLETVGGATRALCELFVEKDPLISDVAQVLFQTGLLDLPDRLVAALLLGSTTD
DPPDTPDRDALETHAYQALIGRPFSEMQAFAGYTDGLSPFDTHQGVKGLEFPRVMVILND
EEAGGFLFSYEKLLGVKPASDSDIKNQREGKDDSLARTRRLLYVTCSRAEESLAIVVYTA
EPELARQRVIDAGWFKDEEVKVL
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccagcgggaagccaatatggatgaaatcccagacgcagatgaggtcatccag
gaatgcctcaatctcgaccgcccgaagagttttttcctttacgccggtgccggctctggg
aaaacccattcgctagtcatggcggtgaaaaacctgaaggacagggaatggcagcgactg
acgtttgaagggcgtcagattgcgatcattacctatacgaatgccgcgtgcgaagagatc
gctcgccgccttgagtacgatcccttggtggttgtgtcgactatccacgctttctcctgg
aggatgatccagggcttcaacgacgacattcgtgactggctgagagtcaagctcaccgca
gacattgacgagctaaatgacaagctcggaagggccaaagggaaaaacaaaacctaccta
gccaacgaagcatcccgagacagcaaatcccgcaggctcaactcgctggacgagatcact
acgttcacctacagccctaccggcgacaatcgaggccggcaggcacttaaccacagcgaa
gtcatccagatggcggcggcgttcattccacgccctcctctgttacatgtcatgaccgac
cttcatccagtgcttctcattgacgagagccaggatacctatggccctctcatggatgcg
tttctccaagcacaggcactggttcctgagcgattctgtctgggactactcggcgacatg
atgcagcgcatctataacgacgggaaggtgcgccttgaggaggcgattccgatggattgg
gcagttcctgaaaagcggataaatcgccgctgcccaacgcgggttgttgagctaatcaac
gtgatccgcaagagtgctgacactcatcaacagacacctaaacccggcgcggtgtctggc
acggtacgaatgttctgcacccaacaaacgccagggcaaggcttcggcctagaagacgat
gtcgcccagcgcatggccgaaattaccggtgatgaccaatgggctgtgggtcgcacgggg
agaaaaaccctgatcttagagcacaagatggcaggacgccgaatgggattcgaaggcgtg
ttcacaccgctttatcaggtagaacaccttcgaaccggattgcttgatggaacactgccc
atcctgaaactcttcttcgaacgggttatgcccattctacaagctgccaagactaacgat
ttcagtctcatggaagctgtgcgacttcattccccacttctcgatcctaaatccatgaaa
gtggcacctgaccagcttgccctgcttgagacagtagggggcgctacccgagcgctgtgt
gaactgttcgtcgaaaaagatccgctgatcagtgatgtagcccaagtcttgtttcaaaca
ggcctactcgacctccctgaccgccttgtggcagcgcttctgttaggttccactacagat
gacccgcctgatacaccggatcgagatgcactggaaacccatgcgtaccaagctctgatc
ggacgcccattctcagaaatgcaggcgttcgctgggtacaccgatggattgtccccattc
gacacccatcaaggcgtgaaagggctcgagttccctagggtcatggtgatcctcaatgac
gaagaggcaggtggcttcttgttcagctacgaaaaacttcttggtgttaaacctgcgtct
gacagcgatatcaaaaatcaacgcgaggggaaagacgactccttggcacgaacccgccgc
ttactctatgtcacctgtagtcgtgccgaggaaagcctcgccattgtggtttataccgct
gagccagaactggctcgacagcgagtgatcgatgctggatggtttaaggatgaggaagtc
aaagttctataa
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