Pseudomonas putida S16: PPS_3775
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Entry
PPS_3775 CDS
T01570
Name
(GenBank) sigma-54 dependent transcription regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
ppt
Pseudomonas putida S16
Pathway
ppt02020
Two-component system
ppt02025
Biofilm formation - Pseudomonas aeruginosa
ppt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPS_3775
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
PPS_3775
02025 Biofilm formation - Pseudomonas aeruginosa
PPS_3775
09142 Cell motility
02040 Flagellar assembly
PPS_3775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppt03000
]
PPS_3775
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ppt02035
]
PPS_3775
Transcription factors [BR:
ppt03000
]
Prokaryotic type
Helix-turn-helix
Other families
PPS_3775
Bacterial motility proteins [BR:
ppt02035
]
Flagellar system
Flagellar assembly proteins
Others
PPS_3775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
AAA_22
nSTAND3
AAA_7
AAA_19
AAA
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
AEJ14316
LinkDB
All DBs
Position
complement(4259782..4261257)
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AA seq
491 aa
AA seq
DB search
MWRETKILLIDDDSARRRDLAVVLNFLGEENLACSSQDWQQVVEPLSSSREVLCVLIGTV
NAPGSVLGLVKTVTGWDEFLPVLLLGEISSAEFPEDLRRRVLSNLEMPPSYSQLLDSLHR
TQVYREMYDQARERGRQREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGTGK
EVVARNLHYHSRRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGG
TLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSIDVRIIAATHKNLETMIEEGTFR
EDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSASIMSLCRHGWPG
NVRELANLVERMAIMHPYGVIGVSELPKKFRYVDDEDEQMVDSLRSDLEERVAINGHTPN
FSNHAMLPPEGLDLKDYLGSLEQGLIQQALDDANGIVARAAERLRIRRTTLVEKMRKYGM
SRQGGEEQAED
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgtgaaaccaagattctgctgatcgacgacgacagcgcacgccgccgcgacctg
gcggtggtgcttaacttcctcggcgaagaaaacctcgcttgctccagccaggactggcag
caagtggtcgagccgttgtcttcgagtcgcgaagtgctgtgcgtgcttatcggcactgta
aatgccccgggcagtgtgcttgggctcgttaagacagtgactgggtgggatgagttcctt
ccggttctgcttttaggtgaaatttcttctgctgagttcccggaagaccttcgccgccgg
gtgctttccaacctggaaatgccgccaagctacagccagctgctggattcgctgcaccgt
acccaggtctatcgcgagatgtacgaccaggcgcgcgagcgtggtcgccagcgcgaaccc
aacctgttccgcagcctggtcggtaccagtcgtgccatccagcacgtgcggcagatgatg
cagcaggtggccgataccgatgccagcgtgctgatcttgggtgagtccggcaccggcaag
gaagtggtcgcgcgcaacctgcactaccattccaggcgccgcgaggcgccgttcgtgccg
gtcaactgcggtgcgatcccggccgagctgctggaaagcgaactgttcggccacgagaag
ggcgccttcaccggggcgatcaccagccgtgccgggcgtttcgagctggccaatggcggt
accctgttcctcgacgaaatcggcgacatgccgttgccgatgcaggtcaagctgttgcgc
gtgctgcaggaacgtaccttcgagcgcgtgggcagcaacaagacccaaagcatcgatgtg
cgcatcattgccgcgacccacaagaacctcgagaccatgatcgaggagggcacgttccgc
gaagacctgtactaccgcctgaacgtgttccccatcgagatggcgccgctgcgtgagcgg
gtggaagacatcccgctgctgatgaacgagctgatctcgcgcatggagcacgagaagcgc
gggtccatccgcttcaactccgcgtcgatcatgtcgctgtgtcgccacggctggccgggc
aacgttcgcgagctggccaacctggtcgagcgcatggcgatcatgcacccgtacggggtg
attggcgtgtccgagctgccgaagaaattccgttacgtcgatgacgaagacgagcagatg
gtcgacagcctgcgtagcgacctggaagagcgcgtggcgatcaacggccatacgccgaac
ttcagcaaccacgccatgctgccacctgaaggcctggacctgaaggactacctgggtagc
ctggagcagggcctgatccagcaggcgctggacgatgccaacggtatcgttgcgcgcgcg
gctgaacgtttgcgtattcgtcgtaccactttggtcgagaagatgcgcaagtatggtatg
agccgccagggcggcgaggagcaggcggaggattga
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