Pseudomonas putida S16: PPS_3863
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Entry
PPS_3863 CDS
T01570
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPS_3863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppt03019
]
PPS_3863
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_3863
Enzymes [BR:
ppt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPS_3863
Messenger RNA biogenesis [BR:
ppt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPS_3863
DNA repair and recombination proteins [BR:
ppt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPS_3863
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_23
HTH_40
GerE
ResIII
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
AEJ14404
LinkDB
All DBs
Position
complement(4356715..4358874)
Genome browser
AA seq
719 aa
AA seq
DB search
MELQMLEQAQRVLKDVFGYDSFRGRQAAIIDCVANGGDALVLMPTGGGKSLCFQVPGLLR
PGLTVVVSPLIALMDDQVATLDELGVPAAALNSTLTPEQQRDLAGRLRRGEVKMLYLAPE
RLVQPRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATA
DMRTREEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCL
SRKKVDETAAFLCDQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPN
VRFVAHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRI
EQHKLDAMLALCEETRCRRQSLLAYFDETLEQPCGHCDNCVDQVQTWDATEPARQALSAV
FRTGQRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVD
IDLEGYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTARTSSSSGGSPASQLVRAEERELW
EALRTLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPVSLSDMAQVSGVGARKLERYGQAFL
EVLNNSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQEL
SLEQALDLPQDLLMEVQDAFLDGEGELPPVSAIAPLFGGRVPEGVLYCVRAALAAEFEL
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtggagttgcaaatgctcgaacaggctcagcgcgttctcaaggacgtctttggctacgac
agtttccgcgggcgccaggcagcgatcatcgactgcgtggccaatggcggtgatgccctg
gtgctgatgcccaccggcggcggcaagtcgttgtgtttccaggtaccggggctgctgcgt
ccgggcctgacagtggtggtctcgccgctgatcgcgctgatggatgaccaggtcgccacg
ctcgacgaactgggtgtgccggccgccgcgctgaactccacgctgaccccggagcagcag
cgtgacctggccgggcgcctgcgccgtggcgaagtgaagatgctgtacctggcgccggaa
cgcctggtgcagccgcgcatgctcgacttcctgcgcgacctggatatctcgctgttcgcc
atcgacgaggcccactgcgtgtcgcaatggggccacgatttccgccccgaatacctgcaa
ctgggccagttggccgagctgttcccgcatgtgccgcgcatagcgctgaccgccaccgcc
gacatgcgcacccgtgaagagatcgtccagcgcctgcacctgcaaggcgccgaacgcttc
ctgtcgagtttcgaccggcccaacatcttctaccgcatcgtgcccaaggaggcgccgcgc
aagcagctgatggctttcctcggcgagcgccgcggcaacgccggtatcgtttattgcctg
tcacgcaagaaggtcgacgaaaccgctgccttcctctgtgaccagggcttcccggcgctg
ccgtatcatgccggcctggcagccgagacgcgcgcggccaaccagcaccgtttcctcaac
gaggaagggctgatcatggtcgccaccattgccttcggcatgggcatcgacaagccgaac
gtgcgttttgttgcccaccttgacctgcccaagtcgctcgaggcgtactaccaggagacc
ggccgtgccggccgtgacgggctgccgtccgatgcctggatggcctacgggctgcaggac
atggtcatgctcaagcagatgctgcagaactccgaaggtgacgagcgccacaagcgcatc
gagcagcacaagctcgacgccatgctggccctgtgcgaagaaacccgctgccgccgccag
tcactgctggcctatttcgacgaaaccctcgagcaaccgtgcgggcactgtgacaactgt
gtcgaccaggtgcagacctgggatgccaccgagcctgcccgtcaggcgctgtcggcggtg
ttccgcaccggccagcgctacggcgtcgggcacctggtcgacgtgctgctgggcaaggac
accgaaaaggtgcgcaatttcggccacgaaaaactctcggtttttggcgtcggcaagggg
ctggccgaggtcgagtggcgttcgctgttccgtcagctggtggcgcgcggcctggtcgat
atcgacctggaaggctacggtggcctgcgcctgtccgacagctgccggccgctgctgcgg
ggcgaggtgaccttgcagctgcgccgtgacctcaagccgcagaccaccgccaggacctcg
tcgtccagtggcggcagcccggccagccagctggtgcgtgccgaagagcgcgagctgtgg
gaagcactgcgtaccctgcggcgcaagctggccgaggagcacagcgtgccgccctatgtc
atcttccccgactcgacgctgctggagatgctgcgtagccagccggtcagcctcagcgac
atggcccaggtcagcggcgtgggcgcgcgcaagctggagcgttatggccaggccttcctc
gaggtgctgaacaatagcggtggcactgacgaagcaccgaaagtagtgctcgacctgcgc
cacgaactggtcagcctggcacgcgccggcatgaccccggcgcagatcgccggccagctc
aactgcagcgagaagaacgtctacagcctgctggccgaggcgctggggcgccaggaactg
agcctggaacaggccctggacctcccgcaagacctgttgatggaagtgcaggatgccttc
ctcgatggcgagggcgagctgccaccggtgtctgcgattgcgccgctgttcgggggacgg
gtgccggagggcgtgctgtactgcgtgcgggctgcgctggcggccgagttcgagctgtaa
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