KEGG   Pseudomonas putida S16: PPS_4194
Entry
PPS_4194          CDS       T01570                                 
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ppt  Pseudomonas putida S16
Brite
KEGG Orthology (KO) [BR:ppt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppt03400]
    PPS_4194
Enzymes [BR:ppt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PPS_4194
    5.6.2.6  RNA 3'-5' helicase
     PPS_4194
DNA repair and recombination proteins [BR:ppt03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PPS_4194
SSDB
Motif
Pfam: DEAD_assoc DEAD WHD_4th_Lhr WHD_Lhr WHD_3rd_Lhr Helicase_C ResIII Cas3-like_C_2 HTH_5 HTH_IclR AAA_25 HTH_9
Other DBs
NCBI-ProteinID: AEJ14733
LinkDB
Position
4748761..4753119
AA seq 1452 aa
MGAGLPAKVIADPADERPLANPPYTLHNQHMNLPAKHHPVLELFHPAVRTWFRRHFATVT
DAQAQAWPLTHAGKSMLLAAPTGSGKTLSAFLAVLDELFRQGLEHQGELPAQTQVVYVSP
LKALSNDIRLNLQAPLEGISQAIADQGLNAPRITTAVRSGDTPQKERAAMRKLAPHILVT
TPESLYVLMGSASGRKGLASVHTVIIDEIHALAGNKRGAHLALTLERLQALCNRPLRRIG
LSATQRPVERVAQFLVGNSRPCAIVDVGHARQRDLAIEVPPVPLGAVMATDVWGLVYDRL
ATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEAVAAHHGSLAKELRLDAEQRLKNGQL
QVLVATASLELGIDIGDIDLVCQIASPGSIAAFLQRVGRAGHQVDGVPKGRLFPTSRDDL
IECVALLDCIRRGELDELHIPRAPLDVLAQQIVAEASNQPWHEQALFDCLRQATPYAELD
QQHYQALLRMLAEGYNGRQGVRSAYLHRDAVSGTLRGRRGSQLTALTSGGTIPDNADYAV
LLEPQALNIGSVNEDFAVESIAGDIFQLGNASYRILRVEPGRVRVEDAHGLPPTIPFWLG
EAPGRSDELSAAVARLQAQIDQQLADNNQAEVLAWLQATFELGEAAAGQLLDYLARTREV
LGALPSQDTLVMERFFDESGGTQLIIHSPYGSRINRAWGLALRKRFCRTFNFELQAAASE
DAIVLSLSSSHSFELDDVWRYLNSRNAESILVQALLDAPLFGVRWRWNASVTMALPRFVG
GRKVAPQIQRMKSEDLIAAVFPDQIACLENIVGERQIPDHPLVEQTLDDCLHEAMDSEGW
LALLRRMESGTVRLLCRDLPAPSPLAAAILNARPYAFLDDAPLEERRTQAVLNRRWNEVQ
NGDDLGALDADAIAAVTAEAWPQPGNADEMHEALMGLGAISQDEVQGNAGWELLLRQLAK
AGRALRLVDEKLWLARERLSLLQVLYPGSRLEPALQVLPGFDQAIEPDIALVELLRARLS
GHGPLTRAQIAAALGKPLPAIEQALTCLEAEGYVLRGHFSPGASELQWCERHLLARIHRY
TVKRLRREIEPVSLQDFMRFLFDWQHLADDTRLRGPQAVAEVLGQLQGFPSAAGAWEAEL
LPARIKDYSPNWLDDACRSGQFAWSRLAATVSSNTLSSTPLVLLPREHLGLWRSLAPVPA
LDSLGARAQRVHEVLNAHGALFFDELAHDAHLLPSELETALQELVGAGLVGADSFTGLRS
LITPAAKRTSRNSRRGHPPLSSSMSHAGRWALLRRGTVDDSQRLEHIARALLRRYGVVCW
RLLERESDVLPPWRELLRCYHRLEARGEIRGGRFIAGLAGEQFALPEAVGLLRQVRRREL
DGALVVVSASDPLNLVGSLLPGAKVPAVSGNRLLYRDGVPVAVRVAGHYSYLVEAPAQEQ
ESWRQKLLRDTI
NT seq 4359 nt   +upstreamnt  +downstreamnt
gtgggagcgggtttacccgcgaaggtcatagccgatccggcagacgaacggccccttgcc
aacccgccctacaccctccataaccaacacatgaacctgcccgccaaacaccacccggtg
ctcgagctgttccaccccgccgtgcgcacctggttccgtcgccacttcgccacggtgacc
gatgcccaggcccaggcctggccgttgacccatgcgggcaagtcgatgctgctagccgca
ccgaccggctcgggcaagaccctcagtgcgttcctggccgtgctcgacgaactgttccgc
caaggcctggagcaccaaggcgagctaccagcgcaaacccaggtggtctacgtttcgcca
ctcaaggcgctgtccaacgatatccgcctgaacctgcaagccccgctcgaaggcatcagc
caggccatcgcggaccagggcctgaacgccccgcgcatcaccacggccgtgcgcagcggc
gacaccccgcagaaggagcgtgccgccatgcgcaagctggcgccgcacatcctggtgacc
acccccgaatcgctctacgtgctgatgggctcggcttctggccgtaaaggcctggccagc
gtgcacaccgtgatcatcgacgaaatccatgccctggccggcaacaagcgcggcgcccac
ctggcactgaccctggagcgcctgcaggccctgtgcaaccggccgttgcggcgcatcggc
ctgtcggccacgcaacgcccggtagagcgggtggcgcaatttctggtcggcaacagccgc
ccctgcgcaatcgtcgatgtcggccacgctcggcagcgcgacctggccatcgaggtgccg
ccagtgccgctgggtgcagtgatggccaccgatgtctggggcctggtctatgaccgcctg
gccaccctggcgcgcgaacaccgcaccaccctggtgttcgtcaacacccgacggctggcc
gaacgcatcacccgccacctcagcgaccgcctgggcaaggaggcggttgccgcgcaccac
ggcagcctggccaaggaactacgcctggatgccgaacaacgccttaagaatggccagttg
caggtgctggtggccaccgcatcgctggagctgggcatcgatatcggcgacatcgatctg
gtctgccagatcgcttcaccaggttcgatagcggcctttctgcagcgggtcggccgcgcc
ggccaccaggtcgatggcgtgcccaagggccgcttgttcccgacctcgcgtgatgacctg
atcgaatgcgtggccctgctcgactgcatacgccggggcgagctggacgagctgcacatt
ccccgggcgccgctggacgtgctggcccagcagatcgtcgccgaagccagcaaccagccc
tggcacgaacaagccctgttcgactgcctgcgccaggccacgccctatgccgaactcgac
cagcaacattaccaggccctgctgcgcatgctcgccgagggctataacggccgccagggc
gtgcgcagtgcctacctgcaccgcgatgcggtgagcggcaccctgcgtggccgccgcggc
agccagctgaccgccctgaccagcggcggcaccatccccgacaacgccgactacgccgtg
ctgctcgaaccgcaggcgctgaacatcggcagcgtcaacgaagactttgcggtggaaagc
atcgccggcgatatcttccagctgggcaatgcttcctatcgcatcctgcgcgtcgaaccg
ggccgggtgcgggtggaggatgcccatggcctgccaccgaccattccattctggctgggc
gaggcgccggggcgcagcgatgagctgtctgccgcggtggcccggctgcaggcacagatc
gaccaacagctggctgacaacaaccaagccgaggtgctggcatggttgcaggccaccttc
gaactgggcgaagccgccgctggccagttgctcgactacctggcccgcacccgcgaagtg
cttggtgccctgccctcgcaggacacgctggtgatggagcgcttcttcgatgagtccggc
ggtacccagttgatcatccattcgccctacggcagccgcatcaaccgcgcctggggcctg
gccctgcgcaagcgcttctgccgcaccttcaacttcgagttgcaggcggcggccagcgag
gacgccatcgtgctgtcgctgtcctccagccacagcttcgaactggacgacgtgtggcgt
tacctgaatagccgcaacgccgagtcgatccttgtccaggcactgctcgatgcgccgctg
ttcggcgtgcgctggcgctggaacgccagcgtgaccatggccttgccgcgctttgtcggc
ggtcgcaaggtggcgccacagatccagcggatgaagagtgaagacctgattgctgccgtg
ttccccgaccagatcgcctgcctggagaacatcgtcggcgagcggcagattcccgatcat
ccgctggtcgagcaaaccctcgacgactgcctgcacgaggcgatggacagcgaaggctgg
ctagcacttttgcggcgcatggaaagcggcacggtacgcctgctgtgccgcgatctaccc
gccccttcgccgttggcggcggccatcctcaatgctcggccatatgccttcctggatgac
gcgccactggaagagcgtcgcacgcaggcagtgctcaaccggcgctggaacgaggtgcag
aacggcgacgacctgggcgcgctggacgccgatgcgattgccgccgtgacggccgaggcc
tggccgcagccgggcaacgccgacgaaatgcatgaagcgttgatgggcctgggtgccatc
agccaggacgaagtgcagggcaatgccggttgggaactgctgctcagacaattggccaag
gccggccgggccttgcgcctggtggatgaaaaactgtggctggcacgcgagcggttgagt
ctgctgcaggtgctgtatcccggctcccggctggaacctgcgttgcaggtactgccaggc
ttcgatcaggccatcgagccggacattgcgctggtcgaactgttgcgagcccgcctgagc
ggccatggcccgctgacccgcgcgcagattgcggcagcacttggcaaaccgctgccggcc
atcgaacaggccctgacctgcctggaggccgaaggctatgtgctgcgtgggcatttcagc
cccggcgcaagcgaactgcaatggtgcgaacgccatctgcttgcgcgcatccaccgctac
acggtcaaacgcctgcgccgggagatcgagccggtcagcctgcaggacttcatgcgcttt
ctgttcgactggcagcacctggctgacgacacgcgcctgcgcggcccgcaagccgtggcc
gaggtactaggccagttacaaggattcccgagtgccgccggagcatgggaggccgaactg
ctgccagcacgtatcaaggactacagcccgaactggctcgacgatgcctgccgtagcggg
cagttcgcctggagccggctggcggcgaccgtgtcgagcaacaccttgtcgagcacaccg
ctggtgctgctgccgcgcgagcatcttgggttgtggcgcagccttgcccccgtacccgcc
ctggatagcctcggcgcacgagcgcaacgcgtccacgaggtgctgaacgcgcatggcgcg
ctgttcttcgacgagctggcacacgacgcccacctactacccagcgaactggagacggcc
ttgcaagagctggtaggcgcaggcctggtgggggccgacagcttcaccggcctgcgcagc
ctgatcaccccggcggcgaaacgcacatcgcgcaacagccgacgcggccacccgccgctg
tccagcagcatgtcccatgccgggcgctgggccttgctgcgcaggggcactgtagacgac
agccagcgcctggagcacatcgcccgggccctgcttcggcgctatggcgtggtgtgctgg
cgcctgctggagcgcgaaagcgatgtgctgccgccctggcgcgaactgctgcgctgctat
caccggctggaagcgcgtggcgagattcgtggcgggcgcttcattgccgggctggccggc
gaacagttcgccttacctgaggcggtggggctgctgcggcaggtgcggcggcgtgaattg
gacggggcattggtggtggtgagtgccagtgacccactgaacctggtcgggtcgttgctg
ccgggggcgaaagtgccggcggtgagcggcaaccgcctgttgtatcgcgacggggtgccg
gtggcggtgcgggtggccgggcactattcatacctggttgaagcgccggcacaagagcag
gaaagctggcggcagaagctgctgcgcgacaccatctga

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