Pseudomonas putida S16: PPS_4612
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Entry
PPS_4612 CDS
T01570
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppt
Pseudomonas putida S16
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppt03019
]
PPS_4612
Enzymes [BR:
ppt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PPS_4612
Messenger RNA biogenesis [BR:
ppt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PPS_4612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AEJ15143
LinkDB
All DBs
Position
complement(5221807..5224335)
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AA seq
842 aa
AA seq
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MISLPIDAVLPALRQALDNRDEAVLEAPPGAGKTTRVPLALLNEPWLAGQSILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGL
VIFDEFHERSLDADLALALSLNGRELLRDDPPLKVLLMSATLEGERLSRLLNDAPVVSSE
GRMHPVDIRWGRPFQAGEFIEPRVVDSVLQALADQTGSLLVFLPGQAEIRRVHQSLQEAL
GERPEVLLCPLHGELDLDAQRAAIDPAPKGLRKVVLATNIAETSLTIDGVRVVIDTGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQ
ADLAGLALQLARWGVTPEQLRWLDQPPTAAFTQAQDLLARLNAFKPGSRDNLSEHGLAMA
ELPAHPRIAHLLLRGQALGLAQMACDVAALLGERDIQRGGGADLHSRLALVSGESRAARG
SHGGVQRARQLARQYRGLLRGKPGAPVVDPDHPRWLGALLALAYPDRVAQQRREGGAEYR
LANGRAALFAEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALFEGVLAEQVERVD
ILDWDEREQVLRAERQTKVGELVLGREPLPNLDDDARAKALLGLVRRKGLNLLTWTPELR
QWQARVALLRQLDLDKEGQSEWPDLGDEALLATLEDWLQPYLGKVSRLSHFAALDVSSIL
RNLLPWPLPQRLDEWAPAHLAVPSGSNIRLDYSENPPILAVRLQELFGLADTPRIAQGRQ
QVKLHLLSPARRPVQVTQDLANFWRTTYTEVKKDLKGRYPKHYWPDDPLVADATARAKPR
GT
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatttcattaccgatcgatgctgtcttgcccgccctgcgccaggccctggataaccgt
gacgaagcggtgctcgaggcgccacctggtgcgggcaagaccacccgcgtgccgctggcg
ctgctcaacgagccgtggctggccgggcagagcattctaatgctcgagccccgccgcctg
gcagcgcgggctgcggccgagcgcctggccagcgaactgggcgaaaaggtcggcgagacc
gttggctatcgcatccgcctggacagcaaggtcgggccgaaaacccgcatcgaggtagtg
accgaaggcatcctcacccgccgcctgcaggccgacccggcgctggagggtgtggggctg
gtgatcttcgacgaatttcacgagcgcagccttgatgccgacctggccttggcattgagc
ctgaatggccgggaattgctgcgggacgatccgccgctgaaggttttgctgatgtccgcg
accctggagggcgagcgactttcgcggctgctgaatgatgccccggtggtaagcagcgaa
ggccgcatgcaccccgtcgacatccgttgggggcggcctttccaggcgggtgagttcatc
gagcctcgggtagtggacagcgtgttgcaggcactggctgaccagaccggcagtttgctg
gtattcctgccgggtcaggccgagatccgccgggttcaccagagcctgcaggaagcgttg
ggcgagcgtcccgaggtcctgctctgcccgctgcatggcgagctcgatctcgacgcccaa
cgtgcggccatcgacccggcgcccaagggcctgcgcaaggtggtgctggccacaaacatt
gccgagaccagcctgaccatcgacggcgtgcgcgtggtgatcgacacaggcctggcccgg
gtaccgcgtttcgaccccggcagcggcatgactcgtctggacacccaacgtatctctcgc
gccagtgccactcagcgcgctggccgtgctggccgcctggagcccggcgtgtgctatcgc
ctgtggtccgaggcccagcatgaccagctggccgcacacggcagcgccgagatcctgcag
gccgacctggccggcctggccctgcaactggcacgctggggcgttacgcccgagcagctg
cgctggctcgaccagccccccactgctgccttcacccaggcccaggacctgctggcacgg
ctcaatgccttcaagcccggcagccgtgacaacctcagcgaacacggcctggccatggcc
gagctgcccgcgcatccacgtattgcgcatttgctgttgcgcggccaggccctgggcctg
gcacagatggcctgtgatgtggctgcgctgctgggcgagcgggatatccagcgcggcggt
ggcgccgacttgcacagccggctggcgctggtcagtggcgagagcagggccgcccgtggc
agccacggtggtgtgcagcgtgcgcgccaattggcccgccagtaccgtggtctgctgcgt
ggcaaaccaggcgcgccggttgtggaccctgatcacccgcgctggctgggcgcgctgctg
gcgctggcctatcccgaccgcgtcgctcagcagcgccgcgaagggggggcggaatatcgg
ctggcgaacggccgggcggcgctgtttgccgaagtcgatgcactgatgaagtgcccgtgg
ctggtgatcgccgacctgggcagccgccagggccagcgcgaagaacgcatctatctggcc
gccgagttcgatccggcgctgttcgagggcgtgctggccgaacaggtcgagcgagtcgat
attcttgattgggacgagcgtgagcaggtgctgcgtgccgaacgccagaccaaggtcggc
gagctggtgctgggtcgtgaaccgttacccaacctggatgacgatgcccgcgccaaagcg
ttgcttggcctggtgcggcgcaagggcctgaacctgttgacctggaccccggaacttcgc
caatggcaagcgcgggtggcgctgttacgtcagcttgatctggacaaagaggggcaaagc
gaatggcctgacctgggggacgaagcgctgctggcgaccctggaagactggctgcagcca
tacttgggcaaggtctcgcggctgagccatttcgccgccctggatgtgtcctcgatcttg
cgcaatctgctgccttggccattgccccagcgcctggacgaatgggcaccggcgcatctg
gcggtgccctccggctcgaacattcgcctggactacagtgaaaacccaccgattctcgcc
gtgcgtctgcaggaactcttcggccttgccgatactccgcgtattgcccaaggccgtcag
caagtgaagttgcatttgttgtcaccggcacggcggccggtacaagtgacccaggatctg
gccaacttctggcgcacgacgtataccgaggttaagaaggatttgaaagggcgttatccc
aagcactattggccggatgaccccttggtggccgatgcgaccgcgcgggcgaagccgcgc
ggcacttga
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