Pseudomonas putida S16: PPS_4970
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Entry
PPS_4970 CDS
T01570
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppt
Pseudomonas putida S16
Pathway
ppt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPS_4970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppt03400
]
PPS_4970
Enzymes [BR:
ppt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PPS_4970
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PPS_4970
DNA repair and recombination proteins [BR:
ppt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PPS_4970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AEJ15497
LinkDB
All DBs
Position
complement(5641598..5642410)
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AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRIVSVERRAKYL
LINAEVGTLISHLGMSGNLRLVELGLPAAKHEHVDIELESGLMLRYTDPRRFGAMLWSLD
PLNHELLLRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGGISRARYLKLAIEIKRVLAAAIEQGGTTLRDFIGGDGQPGYFQQELFVYGR
GGQPCKVCDTELREVKLGQRASVYCPRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccagaagtagaaaccacccggcgcggtattgcgccccatctggaaggc
cagcgcgtcagccgggtggtggtacgtgaccggcgcctgcgctggccgattccggaagac
ctggatgtgcgcctgtcggggcagcgcatcgtcagtgtcgagcggcgcgccaagtatctg
ttgatcaatgccgaggtcggcaccctgatcagtcacctgggcatgtcgggcaacctgcgc
ctggtcgaactgggcttgccggcggccaagcatgagcatgtggatatcgagcttgagtcg
gggttgatgctgcgctacaccgacccgcgccgctttggcgcgatgctgtggagcctggac
ccgctcaatcacgaactgctgctgcgcctggggcctgaaccgctgaccgacctgttcgac
ggcgagcgactgttccagttgtcccgtgggcggtcgatggcggtcaagccgttcatcatg
gataacgcggtagtggtgggggtgggcaacatttacgccaccgaggcgctgtttgccgct
ggcatcgacccccgtcgggaagcgggcgggatttcccgggcgcgctacttgaagctggcg
atcgagatcaagcgtgtgctggcggcggcgatcgaacagggcggcaccacgctacgcgac
ttcatcggtggtgatgggcagccggggtacttccagcaggaattgttcgtgtacgggcgg
ggcgggcagccgtgcaaggtgtgtgacacggagttgcgcgaggtgaagctggggcagagg
gcgagtgtgtattgcccgcgttgccagcgctga
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