Pseudomonas putida KT2440: PP_0004
Help
Entry
PP_0004 CDS
T00114
Symbol
trmF
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification enzyme
KO
K03495
tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
ppu
Pseudomonas putida KT2440
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppu03016
]
PP_0004 (trmF)
03036 Chromosome and associated proteins [BR:
ppu03036
]
PP_0004 (trmF)
Transfer RNA biogenesis [BR:
ppu03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
PP_0004 (trmF)
Prokaryotic type
PP_0004 (trmF)
Chromosome and associated proteins [BR:
ppu03036
]
Prokaryotic type
Chromosome partitioning proteins
Other chromosome partitioning proteins
PP_0004 (trmF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIDA
GIDA_C_1st
SAM_GIDA_C
FAD_oxidored
FAD_binding_2
Pyr_redox_2
Thi4
HI0933_like
AlaDh_PNT_C
DAO
Pyr_redox
FAD_binding_3
Pyr_redox_3
Motif
Other DBs
NCBI-ProteinID:
AAN65638
UniProt:
Q88RW8
LinkDB
All DBs
Position
complement(2486..4381)
Genome browser
AA seq
631 aa
AA seq
DB search
MVDFPSRFDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHL
VKEIDALGGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLW
IFQQSCDDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPP
SIALAHRMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQ
VSCWITHTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEP
EGLNTHELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLET
KVIGGLFFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLIT
LGTQEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQR
LKSTWVRPNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGGEAIDPQVAEQ
VEIRTKYAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPQTLGQA
SRIPGVTPAAISLLLIHLKKRGAGRELEQSA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
gtggtggatttcccttcccgttttgacgtgatcgtcatcggcggcggccatgccggtacc
gaggctgcgcttgcgtctgcacgcatgggtgtgaaaaccctgctgctgacccataacgtg
gaaaccctcggtcacatgagctgcaaccccgccatcggcggtattggcaaaagccatctg
gtcaaagagatcgatgcgctcggcggcgccatggcgctggccaccgacaagagcggcatc
cagttccgcgttctgaacaaccgcaagggcccggccgtacgtgccacccgtgcgcaagcc
gaccgcgccatctacaaggcagtggtacgtgaaatcctggaaaaccagccaaacctgtgg
atattccagcagtcctgcgacgacctgatcgtcgagcaggaccaggtcaaaggcgtggtg
acccagatgggcctgcgtttctttgccgaatctgtggtgctgactaccggtaccttcctc
ggcggccttatccacattggtctgcaaaaccattccggtggtcgcgccggtgatccacct
tcgattgccctggcccaccgcatgcgtgaactgccgttgcgcgtcggccgcctgaaaacc
ggtaccccgccacgcattgacggccgctcggtggacttctcggtaatgaccgaacagcca
ggcgatacgccgatcccggtgatgtcgttcatgggcaatgccgaaatgcacccgcgacag
gtgagctgctggattacccacaccaatgcgcgcacccacgagatcattgcgtcgaacctc
gaccgttcaccgatgtactcgggcgtgatcgaaggtgtcggtccgcgctactgtccgtct
atcgaagacaagatccaccgctttgccgacaaggaaagccaccaggtgttcatcgagccg
gaaggcttgaacacccatgagttgtatcccaacggtatttccacttcgctgccgttcgac
gtgcagttggagctcgtgcgttccatccgtggcatggaaaacgcccacatcgtgcgcccc
ggctacgccatcgaatacgactacttcgatccccgcgacctcaagtacagcctcgagacg
aaagtcatcggcggcctgttcttcgccgggcagatcaacggcaccaccgggtacgaagaa
gccggcgcccagggcctgctggccgggactaacgccgcacttcgggcgcagggccgtgac
agctggtgcccgcgccgcgacgaggcatacatcggcgtactggtggacgacctgattacc
ttgggtactcaggagccgtaccgcatgtttacctcgcgtgccgagtaccggctgatactg
cgcgaagacaacgccgacctgcgcctgaccgaaaagggccgtgaactgggcctgatcgat
gaccagcgctgggccgcattctgcgccaagcgcgacggtatcgagcgtgaggaacagcgc
ctgaaatcgacctgggttcggcccaataccgagcaaggccaggccattgtggataaattc
ggcactccgctgagccacgagtacagcctgctcaacctgctggcgcgccccgaaatcgac
tacgccggcctgatcgaagcgactggcggtgaagcgatcgatccacaggttgccgagcag
gtcgagatccgcaccaagtacgccggctacatcgaccgccagcaggatgaaattgcccga
ctgcgcgccagcgaagacacacgcctgcctgtggatatcgactacacgacgatttccggc
ctgtccaaggagatacagggcaagctgagccagacccgtccgcagacgctgggtcaggct
tcgcgtatcccgggtgtgaccccggcggcgatttccctgttgctgattcacttgaaaaaa
cgcggcgctggccgcgaattggagcaaagcgcttga
DBGET
integrated database retrieval system
