Pseudomonas putida KT2440: PP_0123
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Entry
PP_0123 CDS
T00114
Symbol
polA
Name
(GenBank) DNA polymerase I, 5' -> 3' polymerase with 5' --> 3' and 3' --> 5' exonuclease activity
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03030
DNA replication
ppu03410
Base excision repair
ppu03420
Nucleotide excision repair
ppu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PP_0123 (polA)
03410 Base excision repair
PP_0123 (polA)
03420 Nucleotide excision repair
PP_0123 (polA)
03440 Homologous recombination
PP_0123 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppu03032
]
PP_0123 (polA)
03400 DNA repair and recombination proteins [BR:
ppu03400
]
PP_0123 (polA)
Enzymes [BR:
ppu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PP_0123 (polA)
DNA replication proteins [BR:
ppu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PP_0123 (polA)
DNA repair and recombination proteins [BR:
ppu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PP_0123 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PP_0123 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Motif
Other DBs
NCBI-ProteinID:
AAN65757
UniProt:
Q88RK6
LinkDB
All DBs
Position
127523..130270
Genome browser
AA seq
915 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR
SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDA
AFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAELQRDAAKAGDDV
APAVEPAVKVEAKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGLSFAVE
PHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAIE
MRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDKA
GPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQGALVDAELLKV
QSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAKGQPSTAEAVL
DELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAATGRLSSSD
PNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDV
HRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFA
RYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAA
DIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQAAQLDVP
LLVEAGVGANWDEAH
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctttatcgcgccttccac
gcgctgccaccgctgaccacgtccaagggcatgccgaccggtgcggtgaagggtgtgctg
aacatgctcaagagcctgcgcaagcaatatcccgacagcctgttcgccgtggtgttcgac
gccaagggcggcactttccgcgatgccatgttcgctgagtacaaggccaaccgccccagc
atgccggatgacctgcgggtacagatcgagccgctgcacgccagcgtcaaggcgctgggc
tacccgctgctgtgcgtggagggtgtcgaggctgacgacgtgatcggcaccctggcgcgc
agcagtgccgccctgggtcgcccggtgatcatctcgaccggtgacaaggacatggcgcaa
ctggtggacgggcacattaccttggtcaacaccatgaccggaagcgtgctggacgtggct
ggcgtgcacgagaaattcggcgtcggcccggaacacattatcgacttcctggccctgatg
ggtgacaaggtcgacaacatccccggcgtgccgggcgtgggcgaaaaaacggcggtgggg
ctgttgaccggcatcggcggcggtctcagcgacctttacgccaacctggacaaagtgcca
gcgctggccattcgcggcgccaagaccttgccggccaagctggaggagcaccgcgacgcg
gcattcctgtcctacgaactggccaccatcaaggttgacgtgccgctggatgtggaggtc
gaggcgctggtgtgcggtgaacctgaccgcgaggcgctgctggcgttgtacaccgagatg
gagttcaagagctgggtcgccgaattgcagcgcgatgcggccaaggccggtgacgatgtt
gccccggccgtggagcctgcggtcaaggtcgaggccaaatacgaaaccattctcgaccag
gcccgtttcgacgcctggctggagaagctgcgccaggcaccgctgtttgccttcgacacc
gagaccaccggcctggacgcccagcaggcgcagttggtcggcctgtccttcgcagtcgag
ccgcatgaagcggcctatgtgccgctggcccacgattacgaaggcgcgccggtccagctg
gaccgcgaggccgtgctgctggcgctgaaaccactgctggaggacccggccaaggccaag
gtcgggcagaacgccaagtacgacatcaacatcctcgccaatggctcccccgccatcgag
atgcgcggtgtggcctacgacaccatgctcgagtcgtacgtgctgaactccaccgccacc
cgtcatgacatggacagcctggcgcagaagtacctcgaccacaccacgatcgccttcgag
gacatcgccggcaagggtgccaagcagcttaccttcaaccagatcaacctggacaaggcc
ggcccctacgccgccgaggacgccgacatcaccctgcgcctgcaccatgcattgcaggcc
cgcctggcacagacgccgagcgtgcaaccggtgctgatggatatcgagatgccgctggtg
ccggtgctggccaggatcgagcgccagggtgcactggtcgatgccgagctgttgaaagta
cagagcggtgagctgggcgtgaagatggctgagctggagctgcgtgcctacgagctcgcc
ggtgagacgttcaacctcggctcgcccaagcagctgggcacgatcctttacgacaagctg
ggcatgccggtgttgagcaagaccgccaagggccagccatccaccgccgaagcagtgctc
gacgaactggccttgcaaggctacccgctgccagaggtgctgatgcagtaccgcagcctg
agcaagctcaagagcacctacaccgacaagttaccggggcagatcaacccgcgcaccggg
cgtatccacacgtcctaccagcaggccgtggcggccaccggccggttgtcgtcgagcgac
ccgaacttgcagaacatcccgatccgcaccgctgaagggcggcgtatccgccaggcgttc
atcgccagtccgggttacaagcttctggcggcggactattcacagatcgagctgcgtatc
atggcccacctggccaaggacgaaggcttgctgcatgccttccgcaatgacctggacgtg
caccgcgccacagcagccgaagtgttcggtgtggccctggaagacgtgaccaccgaccag
cgccgcagcgccaaggccatcaacttcggcctgatctacggcatgagcgcctttggcctg
gccaagcagatcggcgtcgaccgcaagcagtcacaggactatatcgaccgctactttgcc
cgctacccaggcgtgctggcctacatggagcgcacccgcgcccaggcggccgagcaaggc
tttgtcgaaaccctgtttggccgccgcctgtacttgccagacatcaatgccaagaaccct
gccctgcgcaagggcgccgagcgcacggcgatcaacgccccgatgcagggtactgctgcc
gacatcatcaagcgggccatggtcaaggtagataactggttgagcgagagcgggctggat
gcccgggtgatcctgcaggtgcacgacgaactggtgcttgaagtacgcgaggacctggtg
cagcaggtgaaagatgaaattcgccagcacatgagccaggccgcgcagctggatgtgccg
ctgcttgtcgaagcaggcgttggtgcgaattgggacgaagctcactga
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