KEGG   Pseudomonas putida KT2440: PP_0353
Entry
PP_0353           CDS       T00114                                 
Name
(GenBank) Exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
ppu  Pseudomonas putida KT2440
Pathway
ppu03030  DNA replication
ppu03430  Mismatch repair
ppu03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PP_0353
   03430 Mismatch repair
    PP_0353
   03440 Homologous recombination
    PP_0353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppu03032]
    PP_0353
   03400 DNA repair and recombination proteins [BR:ppu03400]
    PP_0353
Enzymes [BR:ppu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PP_0353
DNA replication proteins [BR:ppu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PP_0353
DNA repair and recombination proteins [BR:ppu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PP_0353
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2 DUF6621
Other DBs
NCBI-ProteinID: AAN65984
UniProt: Q88QY1
LinkDB
Position
complement(429669..430379)
AA seq 236 aa
MSLFAWLRPSAPELDHTTRQRLARLPKPVPLGVCTLREQRWVVLDLETSGLNPNRDQVLS
IGAVAIEDGAIDFAQQFERTLHRPLQKTNASVLIHGLGPSALAAGCDPAEALLDLLDFIG
NSPVLAFHAPFDQRMLARALKESLGYRLQSPFLDIAELAPMLNPDTVLREAGLDDWVARF
GLQVEERHHASADAQVTAELALILFSQARRQQLDSPLQLEQRLRGWRRRKMQSHGL
NT seq 711 nt   +upstreamnt  +downstreamnt
atgagcctgttcgcctggctgcgccccagcgcgcccgagctggaccacaccacacgccag
cgcctggcccggttgcccaagcccgtgccgctgggggtatgtaccctgcgtgagcagcgc
tgggtggtgctggacctggaaaccagcgggctcaaccccaaccgtgatcaggtactgtcg
atcggggcggtggccatcgaagacggtgccatcgactttgcccagcagttcgaacgcaca
ctgcaccggcctttgcagaagaccaacgccagcgtactgatccacggtttgggccccagc
gccctggctgccggttgcgacccggccgaggccctgctggatttgctcgatttcattggc
aacagcccggtgctggcgtttcacgcgccattcgaccagcgcatgctggcgcgtgcgctg
aaagagagcctgggttaccgcttgcagtcgccattcctcgatatcgccgagctggcgccg
atgctcaaccccgacaccgtgctgcgcgaggccgggctggatgactgggtagcgcggttt
ggcttgcaggttgaagaacgccatcatgccagtgccgatgcccaggtgaccgcagaactg
gcgctgatcctgttcagccaggcccggcgccagcagctggacagcccgctgcagctggag
caacggttgcgcgggtggcgacggcgcaagatgcagagtcatggtttgtag

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