Pseudomonas putida KT2440: PP_0448
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Entry
PP_0448 CDS
T00114
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PP_0448 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppu03021
]
PP_0448 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppu03400
]
PP_0448 (rpoC)
Enzymes [BR:
ppu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PP_0448 (rpoC)
Transcription machinery [BR:
ppu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PP_0448 (rpoC)
DNA repair and recombination proteins [BR:
ppu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PP_0448 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AAN66078
UniProt:
Q88QP1
LinkDB
All DBs
Position
541761..545960
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVIVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDAAGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLASEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtaatctgcgagaagtgcggcgttgaagttgccctggcgaaggttcgtcgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgagcgcgtgctctac
ttcgagagctatgtcgttatcgacccgggcatgactaccctggaaaagggccagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgatgcccgtatg
ggggccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggccgc
ctgcgcgaagaaattccgcagaccaactcggaaaccaagatcaagaagctttccaagcgt
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagtgctgccgccggacctgcgtccgctggttccgctggatggtggccgtttc
gcgacttccgacctgaacgacctgtatcgccgggtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggttgacgctctgctggacaacggccgtcgtggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgctgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaacccgta
ctgatcgaaggtaaggctattcagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgtgcgctgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgggaagccatcaatgcc
aagggcgaaggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggctcggtggtcaagaacacccgcatcgttgacaccaccgtcggccgtgcgctgctgttc
caggttgtgccggcaggtctgccgtatgacgtggtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gccgaccaactgatgtacaccggtttcgcatactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaacgctaccgatgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggttccatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtctggcggataccgcactgaaaaccgctaactccggttacctgactcgtcgtctg
gtggacgttgcccaggatctggtagtgaccgagatcgactgcggcaccgatcagggcctg
gtgatgacgccacacatcgaaggcggcgacgttgtagagccactgggtgagcgtgtattg
ggtcgtgtcatcgcccgtgacgtattcaagccaggcaccgaggacgttatcgttccggcc
ggtaccttggtcgacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcaactgcgaaacccgctacggcatttgcgccaagtgctacggt
cgtgatctggctcgtggtcaccaggtgaacatcggtgaggctgtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggttaagaatggcggtatggtgcgtctg
cacaacctgaagcaggttgagcgtgccgacggtaacctggttgccgtatcgcgttcgggt
gagttggcgattgctgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgaaaaggtcgaagctggcgccatcgtcgccaagtgg
gacccacacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagaccgacgaactgaccggcttgaccaacattgaa
gtactggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggcaatcaagatg
gtcgatgctgcaggcaaggatctgtacctgccaggtactgacgtacctgcccagtacttc
ctgccggccaacgcccttgtcggtgtggctgacggtgctcagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagagacgtcgaagacccgtgacattaccggtggtctgccacgc
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcattcggtaaagagaccaagggcaagcgtcgcctggtgatcactccgacc
gacggtagcgaaccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggtgaacaggtaaaccgcggtgaagttatctccgacggcccgagcgatccgcatgacatc
ctgcgtctgctgggtgtgagtgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccattctgcgtcagatg
ctgcgcaaggttgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtgctggtagagaacgagcgtctcgctagcgaggacaagttcatctcc
aagttcacccgagtgctgctgggtatcaccaaggcctcgctgtccaccgagtcgttcatc
tccgcggcttccttccaggaaacaacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
actggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaaaccgctgcgt
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaattccagcggtaattaa
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