KEGG   Pseudomonas putida KT2440: PP_1061
Entry
PP_1061           CDS       T00114                                 
Name
(GenBank) putative ATP-dependent DNA helicase lhr
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ppu  Pseudomonas putida KT2440
Brite
KEGG Orthology (KO) [BR:ppu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppu03400]
    PP_1061
Enzymes [BR:ppu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PP_1061
    5.6.2.6  RNA 3'-5' helicase
     PP_1061
DNA repair and recombination proteins [BR:ppu03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PP_1061
SSDB
Motif
Pfam: DEAD_assoc DEAD WH4_Lhr WH_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 AlkZ-like DprA_WH DUF5805
Other DBs
NCBI-ProteinID: AAN66686
UniProt: Q88NZ2
LinkDB
Position
complement(1212654..1216958)
AA seq 1434 aa
MNLPAKHHPVLELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSA
FLAVLDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNA
PRITTAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIH
ALAGNKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHA
RKRDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDR
LGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSI
AAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQ
QIVAEASNQAWHEQELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYLHRDA
VSGTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGN
ASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGD
TVEVLAWLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHS
PYGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAE
PILIQALLDAPLFGVRWRWNAGVAMALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACL
ENIAGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASA
ILNARPYAFLDDAPLEERRTQAVLNRRWNDVHSSDDLGALDADAIAAVAAEAWPQPANPD
EMHEALMSLGAIGQVEVDANPCWDLLLRQLAKAGRALRLPDDKLWLARERLNLLLALYPT
AHREPALERLAGFDQPIEPDHALSELLRARLSGHGPQTLAQIAAPLGKPVTDIEQALARL
EAEGYVLRGHFSPGATDLQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDWQHLA
PDERLRGPQAVAEVLGQLQGFPSAAAAWEAELLPARIKDYSPHWLDEACRSGQFAWSRLA
ATVASSTLTSTPLVLLPRDQLNTWRSLAPAPAVDALGLRAQRVHEALKTQGALFFDELAH
EAHLLPSELETALQELVGSGLARADSFTGLRSLITPATKRSSRNSRRGHPPLSSSMAHAG
RWALLRRSDAPPDHDQRLEHIARTLLRRYGVICWRLLARESDVLPPWRELLRCYHRLEAR
GEIRGGRFIAGLAGEQFALPEAVVLLRQVRRREPDGTLQVVSAGDPLNLIGSLLPGAKVP
AVIGNRLLYRDGIPVAVRMAGRYAYLVEASAQEQESWRQKLLRDTLERVYPRIR
NT seq 4305 nt   +upstreamnt  +downstreamnt
atgaacctgcccgccaaacaccacccggtgctcgagctgttccatcctgccgtcagcacc
tggttccgccgccacttcgccacggtcaccgatgcccaggcacaggcctggccgttgatc
cacgccgggcaatccatgctgctggccgcgccgaccggctcaggcaagaccctgagcgct
tttctggccgtgcttgatgagctgctgcgtgaaggcatgaagcaccagggcgaactgccc
gcacagaccctggtgatctacgtttcacctctgaaggccctgtccaatgacattcgtctg
aacctgcaggccccgctcgaaggcatcagccaagccattgcagagcaaggcctgaacgcc
ccacgcatcaccacggcggtacgcaccggcgatacgccgcagaaggaacgcgccgccatg
cgcaagctggccccgcacattctggtgacgacccccgaatcgctttacgtgctgatgggc
tcggcttctggccgtgaaggcctggcccatgtgcacacggtaatcgtcgacgaaatccat
gccttggccggtaacaagcgtggcgcccatctggccctgaccttggaacgcctgcaagcc
ttgtgcaaaaagccactgcggcgtatcggcctgtccgctacccaacgcccggtcgaacgg
gtggcacagtttctggtgggtagcgggcgtccctgcgccattgtcgatatcggccatgcc
cgcaagcgtgacctggccatcgaagtgccgccggtaccgctgggggcggtgatggccatt
gatgtctggggcctggtgtatgaccgcttggccacccttgcccgtgaacaccgcaccacg
ctggtattcgtcaacacccggcgcctggccgaacgtatcacccgccacctcagcgaccgg
ctgggcaaggaggcggttgccgcacaccatggcagcctgtccaaagcgctgcgcctggat
gcggagcagcggctcaagagcggccagctccaggtgctggtagcgaccgcatcgctggag
cttggcattgatatcggcgatatcgacctggtctgccaggtcgcctcgccgggctcgatt
gccgccttcctgcaacgggttggccgcgctggacaccaggtcgatggtgtgccgaagggg
cgcctgttccctacctcacgcgatgacctgatcgaatgcgttgccttgcttgactgcgtt
cgacagggcgaactggacgcactgcacatcccccgggcaccgctggatgtgctggcccag
cagatcgtcgcagaagccagcaaccaggcctggcacgaacaggaactgctggattgcctg
cgccaggccacaccttacgccgagcttgaccagcaccactaccaggccctgctgcgcatg
ctcgccgagggctacaacggccgccagggtgtgcgcagtgcctacttgcaccgtgacgca
gtgagcggcacgctgcgtggccgacgtggcagccaactgaccgcgctgaccagcggcggc
accatccccgacaacgccgactacgccgtgttgctggaaccgcaggcgctgaacatcggc
agcgtcaatgaagactttgccgtggaaagcattgccggcgatattttccagctgggcaac
gcctcctatcgcattctgcgcgtcgagccgggccgggtgcgggtagaggatgctcatggc
ctgccaccgaccattccgttctggctgggtgaagcgccggggcgcagtgacgagctgtct
gccgccgtggcccggctgcaggcgcgaatcgaccagcaactggcgctggcaggcggcgac
acggtggaggtactggcctggttgcaggcgaccttcgaactggacgaagcttgtgcgggc
cagttgctcgactacctggcccgcacccgtgaagtgcttggcgccctgccctcgcaggat
acgctggtgatggaacgttttttcgatgagtccggcgggacccaactgatcattcattca
ccctacggtagccgcatcaaccgcgcctggggcctggccctgcgcaagcgcttctgccgc
accttcaacttcgaactgcaggctgccgccagcgaggacgccatcgtgctgtcactgtcg
accagccacagtttcgagctggacgaagtgtggcgctacctgaacagccgcagcgccgag
ccgattctcatccaggccctgctcgatgcaccgctgtttggcgtgcgctggcgctggaat
gcaggcgtggccatggcactgccgcgctttgtgggcggacgcaaggtggcgccacaaatc
cagcgcatgaagagtgaggacctggttgccgccgtgttccctgaccagatcgcctgcctg
gagaacatcgccggcgagcggcagattcccgaccatccgctggtcgagcaaaccctcgac
gattgcctgcacgaggcgatggacagcgaaggctggctggccctgctgcggcgtatggaa
agcggtgcagtgcgcttgctgtgccgggatctgcccgccccctcgccgctggcatcagcg
attctcaacgcccggccttatgcctttctggacgatgcgccactggaagaacgacgtacc
caggcggtgctcaaccggcgctggaacgacgtgcacagtagcgacgacctgggcgcgctg
gacgctgatgccattgctgccgtcgcggccgaggcctggccacagccggccaatcccgac
gaaatgcacgaggcattgatgagcctgggtgccatcggtcaggtcgaggtagatgccaac
ccctgctgggatttgctgctaaggcagctggccaaggctgggcgtgccttgcgcctgccc
gatgacaagctctggttggcccgcgaacgcctgaacctgctgctggcactgtaccccaca
gcgcacagggagccagcgctcgaacggctcgctggcttcgaccagcccatcgagcccgac
cacgcactgagcgaactgctgcgcgcccgcctgagcggccatggcccccagaccctggcg
cagatcgctgcgccattgggcaaaccggtaaccgatatcgagcaggctctggcccgcctg
gaagccgaaggctatgtgctgcgcgggcatttcagcccaggtgcaactgacctgcaatgg
tgcgaacgccacttgctggcacgcatccaccgctacacggtcaaacgcctgcgccgcgag
atcgaaccggtcagcctgcaagacttcatgcgctttctgttcgattggcagcacctggcg
cctgacgagcgcctgcgtggtccgcaggcggtggccgaagtgctcggccagttacaaggg
ttccccagcgccgcagcggcctgggaggcggaactgctgccggcgcgtatcaaagactac
agtccgcactggctcgacgaagcctgccgaagcggccagtttgcctggagccggctggcg
gcaacagtggcgagcagcacgttgaccagtaccccgctggtgttgctgccgcgggaccag
ttgaacacgtggcgcagcctggcgcccgcacctgctgtcgacgcccttggcctacgtgcg
caacgtgtgcacgaagcgctgaaaacccagggtgcgctgttcttcgatgaactggcacat
gaggcacacctgctgcccagtgaactggaaactgcactgcaggagctggtgggctcgggc
ctggccagggcggacagtttcactggcttgcgcagcctgatcacgcctgcaaccaagcgc
agctcacgtaacagccgccgaggccacccgccgctttccagcagcatggcgcatgccgga
cgttgggccctgctgcgccgcagcgatgcgcccccggatcacgaccagcgcctggagcac
attgcccgcacgctgctgcgccgctatggcgtgatctgctggcggctgttggcgcgcgag
agtgatgtactgccgccctggcgtgagctgctgcgctgctatcaccgattggaagcgcgt
ggcgagatccggggcgggcgcttcattgccgggctggccggtgaacagttcgccttgcct
gaggcggtagtattgctgcggcaagtgagacgacgtgaaccggacggaacgctgcaggtg
gtgagcgccggtgacccgctgaacctgatcggctcgttgctgcctggggcgaaagtgccg
gcagtgattggcaaccggcttctgtatcgcgacgggataccggtggcggtgcggatggcc
gggcgttacgcgtatctggtcgaggcgtccgcacaggagcaggaaagctggcggcaaaaa
ctgctgcgcgacaccctggagcgggtttacccgcgaatacggtag

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