Pseudomonas putida KT2440: PP_1295
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Entry
PP_1295 CDS
T00114
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP_1295 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppu03019
]
PP_1295 (rhlB)
Enzymes [BR:
ppu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PP_1295 (rhlB)
Messenger RNA biogenesis [BR:
ppu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP_1295 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AAN66919
UniProt:
Q88NB7
LinkDB
All DBs
Position
complement(1480295..1481737)
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AA seq
480 aa
AA seq
DB search
MLKALRKIFGKGEAAPQAAAPAASVTPEARPAAKPAAPHANPAPKAEQPAAATPPADQPA
KDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQ
VLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVV
QIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLD
MVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPA
IVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLV
RDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDP
DDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcagaaaaatattcggcaagggagaggccgcaccacaagccgccgct
cctgctgccagcgtgacgccggaagcccggcccgcggcaaaaccggccgcaccccatgcc
aaccccgcccccaaggctgagcaacctgccgccgcgacgccacctgccgatcaaccggcc
aaggacaaaccgcgccgcgaacgcaagcccaagccacaggccagcctgtggaagcccgaa
gacttcgtggtcgagccgcaggaaggcaaaacccgcttccacgacttcaagctgtccaac
gagctgatgcacgccatccacgacctgggcttcccgtactgcacgccgatccaggcgcag
gtcctgggttacaccctgcgtggccaggacgccatcggccgggcccagacgggcaccggc
aagacggccgccttcctgatctcgatcatttcccagttgcagcagacgccaccgcctaaa
gagcgctacatgggcgagccgcgggcgctgatcatcgcccccacccgcgagctggtggtg
cagatcgccaaggacgccgctgccctgaccaagtacaccggcctgaacgtgatgagcttc
gtcggtggcatggacttcgacaagcagctcaaagccctggaagcgcgccactgcgatatt
ctggtggctacgccgggccgcctgctggacttcaaccagcgtggtgaagtgcacctggac
atggtcgaggtgatggtgcttgacgaagccgaccgtatgctcgacatgggcttcatcccc
caggtccgccaaatcattcgtcagacaccgcctaaaagcgagcgccagaccctgctgttc
tccgccaccttcaccgacgatgtgatgaacctggccaagcagtggaccaccaacccggcc
atcgtcgagatcgagccggagaacgtggccagcgaaacggtggagcagcacgtgtatgcg
gtggccggcagcgacaagtacaaactgttgtacaacctggtgacccagaacaagtgggaa
cgggtgatggtgttcgccaaccgcaaggacgaagtgcggcgcatcgaggaaaagctggta
cgcgacggtatcaatgcggcccagctgtcgggcgacgtgccgcagcacaaacgcatccga
accctggagagcttccgcgaagggcgcatcaccgtgttggtcgccaccgacgtggccggg
cgtgggatccatatcgatggcatcagccacgtgatcaacttcaccctgccggaagaccct
gacgactacgtgcaccgcattggccgtaccggccgtgccggcaccagtggtgtatcgatc
agctttgccggtgaggatgactcgtatcagctgccggcgatcgaagcgctgctggggcgc
aagatcaagtgcgagatgccgccggatgaactgctcaagccggtgccgcgcaagcatcac
tga
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