Pseudomonas putida KT2440: PP_1868
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Entry
PP_1868 CDS
T00114
Symbol
deaD
Name
(GenBank) ATP-dependent DEAD-box RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP_1868 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppu03019
]
PP_1868 (deaD)
03009 Ribosome biogenesis [BR:
ppu03009
]
PP_1868 (deaD)
Enzymes [BR:
ppu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PP_1868 (deaD)
Messenger RNA biogenesis [BR:
ppu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP_1868 (deaD)
Ribosome biogenesis [BR:
ppu03009
]
Prokaryotic type
rRNA helicases
PP_1868 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AAN67487
UniProt:
Q88LR1
LinkDB
All DBs
Position
2090675..2092354
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AA seq
559 aa
AA seq
DB search
MTQETGGFAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAT
RQTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTTDLGCSARAL
ASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatcttaacccgaacattgttgctgcc
gttgtggctaccggctacgaagagccgtccgccattcagcaacaatcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaaaaccgctgccttc
gccctgccgatcctgaacaagatcgatgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagttgctaccgctttcgaaacctacgccaagcag
atgccgggcgtgaacgttgtcgccgtctacggtggtgccccgatgggcccacagctgcgt
gcgatccgcaacggcgcgcaaatcgtcgtggccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcttgtcgaccgtacagtacctggtactggacgaagccgacgag
atgctgaagctgggcttcatggacgacctcgaagtgatcttcgacgcaatcccggctacc
cgtcagaccgtactgttctccgcaaccctgccgtcgtcgatccgttcgatcgccgagcgt
cacctgcgtgaacccaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggcccacctgatggtccacgcggaccagaagatcccggctgtgctgcgtctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggccgccgcgctggaagccaaaggctacaaggctgctgcactgaacggcgatatcgct
cagaaccagcgtgagcgcgtgattgactcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtcgctgcccgaggcctggacgtaccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccggagtcctacgtacaccgtatcggccgtactggccgtgccggt
cgcgatggccgtgcactgttgctggttaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgttaccgggcagaaggttgccgaagcgcgcctgccgaatgcccaggccgtgctg
gatgcccgcatcaagaagctgacctcgagcctggcgccgctggtagccgaagcagaagcc
acccacggcgagctgttcgaccgcctgaccaccgacctgggttgcagcgcgcgtgccctg
gcttcggccctgctgcgcaaggccaccaatggccaggcgctggacctggcggcggtagag
cgtgagcagccgctggtgccgagcttcgccccgcgtggtgagcgtaccgagcgcggtgag
cgtggcgagcgtcctgatcgtggtgaccgtgagcgccgtgcaccgttgccgttggccgaa
ggccgcgtgcgttgccgtaccgccttgggtgcccgtgatggcatcgctgccaagaatctg
ctgggggcgatcctcaacgaaggtggcctggcgcgtgacgctatcggccgcatccaggtg
cgcgacagcttcagcttggtcgagctgccggaagacggcctcgagaagctgctgtccaag
ctcaaggacactcgcgtggctggcaagcagctgaagctgcgtcgctaccgcgaggattga
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