Pseudomonas putida KT2440: PP_2024
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Entry
PP_2024 CDS
T00114
Symbol
sbcC
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ppu
Pseudomonas putida KT2440
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppu03400
]
PP_2024 (sbcC)
DNA repair and recombination proteins [BR:
ppu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PP_2024 (sbcC)
Archaeal homologous recombinant proteins
PP_2024 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_21
AAA_29
nSTAND3
ABC_tran
cobW
RsgA_GTPase
MMR_HSR1
AAA_22
AAA_15
Motif
Other DBs
NCBI-ProteinID:
AAN67638
UniProt:
Q88LB1
LinkDB
All DBs
Position
complement(2296477..2300121)
Genome browser
AA seq
1214 aa
AA seq
DB search
MKILAIRLKNLASLAGPIDIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGTVPR
LNAIGREAKVPDADGDIPTSDPRNLLRRGTGSGFAEVDFVGIDGRRYRARWEANRARDKA
NGKLQHSRQSFYDLDSEQVLGSGKNEYKQLVEARLGLNFEQFTRAVMLAQSEFGAFLKAD
DKDRSELLEKLTNTAIYTRLGQRAFSKAREAGEAHNALKERASHLLPMAAEARAELDQRL
EQAQQQFKADQAGERQLEQQRNWLNEQRQLQAQHTEASTTLQAAELDWQQLAEPRLDLAR
LERLAPQRHQFHRRQALSAQLAPVAAKIAEQQQQQAELQVRTRELEQALDTARQALADRQ
AEHGENAPRLRQAFAAQDTLARLDQELAAQRSISQQAQQQVADGQQQLQQLEDNQQRSVQ
QLALIDTALADSQHLAGLANAWHAYLPQLKQVMLIGGRLTKGREELPGLQAQASQANARL
QAERDAYDLLFREAKAEPQALAEQIDLLGGMLQDNRKQQRAVEEMSRLHGREQELRQQLD
ALRERQQQAMLQRQQLITEGTAAKAELEAAEQALTLTRQLLERQRLARNTSVEELRNQLR
DGEPCPVCGSAEHPFHQPEALLQSLGRHDQAEEHAAQKQVETLNSKLVELRTQLGVVNAQ
LKDFQQQQQRLGEQLQPLVAQVQAHSLWPALAPQDDKARSAWLDSQLRRLDEEISQDEKR
QSALLALQRDAARLNQQLQAAHDAQQQAQRHLEQQHQALANDEQLLQQGLNDLAGVLPEE
ALKALNDDPANAFLALDQQIAQRLQQLEQRKDELEEQQARQTQLDKLRDQQQARVQGQQQ
LQQKLAALDEQRQQALASLAELLGEHASAEAWQQHMDTALEHARTLDADTAQRLQDLRTQ
GVQLASELKANTQQQQALDAECQQLQAQIAQWRSEHPELDDAGLDRLLAMDDAQVNELRQ
RLQGAEKAIEQGRVLLQEREQRLQHHAAQMTVDTTVQALEQALAELRERLANHEQQCAEL
RAQQADDQRRQQAHQALAAEIEQAHQQWQRWARLNALIGSASGDVFRKIAQGYNLDLLLH
HANAQLRQLARRYRLKRGGSALGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLRIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
RRQGNGLSDVEVCG
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctcgccatccgcctgaagaacctggcatcgctggccggcccgatcgacatc
gatttcaccgcagaacccttggccagcgctggcctgttcgccatcaccgggcctaccggt
gccggcaagagcaccctgcttgacgccctgtgcctggcgctgttcggcaccgtgccgcgc
ctcaatgccattggccgtgaggccaaggtgccggatgccgacggcgacatccccacctcc
gacccgcgcaacctgctgcgccgtggcaccggcagcggttttgccgaggtcgatttcgtc
ggcatcgacggccgccgctaccgcgcccgctgggaagccaaccgcgcccgcgacaaggcc
aacggcaaactgcagcacagccgtcaaagcttctacgacctcgacagcgagcaagtgctc
ggcagtggcaagaacgaatacaagcaactggtcgaagcccgtctgggcctgaacttcgaa
cagttcacccgtgcggtgatgctggcccagagcgagttcggcgcgttcctcaaggccgac
gacaaagaccgtagcgagttgctggaaaagctcaccaacaccgcgatctacacccgcctg
ggccagcgtgccttcagcaaggcgcgcgaagccggcgaggcgcacaacgccctgaaagaa
cgcgccagccatctactgccgatggctgccgaggcccgtgccgagctcgaccagcgcctg
gagcaggcgcaacagcagttcaaggccgaccaggccggcgagcgccagctggagcagcaa
cgcaactggctgaatgaacaacgccagcttcaggcccaacacaccgaagccagcaccacg
ctgcaggccgccgaactggactggcaacagctggccgaaccacgcctggacctggcacgc
ctggagcgcctggccccacagcgtcaccagttccaccgccgacaggccctgagcgcacag
ctggcgccagtggccgcgaaaattgccgaacagcaacagcagcaagccgaactgcaggtg
cgcacccgcgaactcgaacaggcgctggacactgcgcgccaagcgcttgccgaccgccag
gccgagcacggcgagaatgcgccgcgcctgcgccaggcctttgccgctcaggatacgctg
gcacgcctggaccaggagctggccgcccagcgcagcatcagccagcaggcgcaacagcag
gttgctgacggccagcagcaactgcagcagctggaagacaaccagcagcgcagcgtgcaa
caactggcgctgatcgacaccgcgcttgccgacagccagcacctggcgggcctggccaat
gcctggcacgcctacctgccgcaactgaagcaggtgatgctgatcggtggccggctgacc
aagggccgagaagagctacccggcctgcaggcccaggccagccaggccaatgcgcgcttg
caggccgagcgcgacgcctacgacctgttgttccgtgaagccaaggccgaaccccaggcc
ctggccgagcagatcgacctgctcggcggcatgttgcaggacaaccgcaaacagcagcgc
gccgtagaggaaatgtcacgcctgcacggccgtgaacaggagctgcgccagcagctggat
gccctgcgcgaacggcagcagcaggccatgctgcaacgccagcaactgattaccgaaggc
accgccgccaaggccgagctggaggccgccgaacaggcgttgacgctcacccgtcaactg
ctggaacgccaacgcctggcacgcaacaccagcgtcgaagaactgcgtaaccaactgcgt
gacggcgaaccctgcccggtctgtggcagcgccgaacaccccttccatcagccagaagcg
ctgctgcagagcctgggccgccatgaccaggccgaagagcacgccgcccagaagcaggtc
gagacgctcaacagcaagctggtggagctgcgtacccagctgggtgtggtcaatgcccag
ctcaaggacttccagcaacagcagcagcgactgggcgaacagttgcaaccgctggtggct
caggtacaggcacacagcctgtggccagccctcgccccgcaggacgacaaggcccgtagc
gcctggctcgacagccagctgcgtcgcctggatgaagaaatcagccaggacgagaaacgc
cagagcgccctgctcgccctgcaacgggacgcggcccgcctcaaccagcaattgcaggct
gcccacgacgcccaacaacaggcccagcgccacctggagcaacagcaccaagccctggcc
aacgacgagcagctgttgcagcaaggcctgaacgacctggccggcgtactaccagaggaa
gcgctcaaggccctcaacgacgacccggccaatgccttcctcgccctcgaccagcagatt
gcccagcgcctgcagcaactggaacagcgcaaggacgaactggaagagcagcaagcccgc
caaacccagctggacaagctgcgtgaccaacagcaggcgcgcgtgcaaggccagcagcag
ttacagcagaaactggccgccctcgacgagcaacgccagcaagccctggcctcactcgcc
gaactgctcggcgaacatgccagcgccgaagcctggcagcagcacatggacaccgcgctg
gagcacgcccgcacccttgacgccgacaccgcccagcgcctgcaagatctgcgcacccaa
ggcgtgcaactggccagcgagctcaaggccaatacccagcaacaacaggcactggatgcc
gaatgccaacagttgcaggcccagatcgcccagtggcgcagcgagcatccggaactggac
gatgccggcctcgatcgcctgctggccatggatgacgcgcaagtcaatgaattgcgccag
cgtttgcaaggcgcggaaaaagccatcgagcagggccgcgtcctgctgcaggagcgcgaa
cagcgcctgcagcatcacgcggcacagatgaccgtggacaccacggtccaagccctggag
caagccttggccgaactgcgcgaacgcctggcaaaccacgagcagcaatgcgccgaattg
cgtgcacaacaggccgacgaccagcgccgccagcaggcccaccaggcgctggcggcagaa
atcgaacaggcccaccagcagtggcaacgctgggcccgcctcaatgccctgatcggttcg
gcctccggtgatgtgttccgcaagatcgcccaaggctacaaccttgacctgctgctgcac
cacgccaacgcccagctacgtcagctggcccgtcgctaccgcctcaagcgcggcggcagc
gccctgggcctgctggtgctggacaccgagatgggcgacgaactgcgttcggtgcactcg
ttgtcgggcggggaaaccttcctggtgtcgctggccctggccctgggcctggcgtcgatg
gcgtccagcaccttgcgtatcgagtcgctgttcatcgacgaaggtttcggcagcctcgac
cccgagtcgctgcaactggcaatggacgccctcgacggcttgcaagcccagggtcgcaaa
gtggcggtgatctcccacgtacaggaaatgcacgagcgcatcccggtgcagatccaggtg
cggcgccagggtaatggcctcagtgacgtggaggtgtgcgggtga
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integrated database retrieval system
