Pseudomonas putida KT2440: PP_3086
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Entry
PP_3086 CDS
T00114
Name
(GenBank) putative RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PP_3086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppu03021
]
PP_3086
Transcription machinery [BR:
ppu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PP_3086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_11
HTH_DeoR
Trp_repressor
GerE
KorB
HTH_7
Motif
Other DBs
NCBI-ProteinID:
AAN68694
UniProt:
Q88IB3
LinkDB
All DBs
Position
complement(3473601..3474107)
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AA seq
168 aa
AA seq
DB search
MPPAEPSLNLQVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQGNPYFGNE
PRALLTHIAKGLVVDRWRRQDVERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRD
MPARVRQVFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACLSIE
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgccacccgccgaacctagcctcaacctgcaggtccagacgctgtacaccgagcaccat
ggctggctgcagggttggctgggccgtaaactgggcaatgcctgcgatgccgccgacctg
gctcacgacacgttcgtgcgcttgctcagccgccaaggcaacccctactttggcaacgaa
ccccgggccttgcttactcatatagccaagggcctggtggtcgaccgctggcgccgccag
gatgtcgagcgggcctacctggaggccatcgcccatttgccgcaacccgaggtgccttcg
ccggaaacgcgctggctgatccttgaaaccctgtaccgcatcgacgccatgctgcgcgac
atgccggcgcgggtacgtcaggtgttcctgctgtcacagctggacggcctgacctacgcc
caaatcgccgaacagctgcaggtttcgctgatcacgatcaagcgcgacatgcgtacggca
ttccttgcctgcctgagcatcgagtga
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