Pseudomonas putida KT2440: PP_3087
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Entry
PP_3087 CDS
T00114
Name
(GenBank) putative excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PP_3087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppu03400
]
PP_3087
DNA repair and recombination proteins [BR:
ppu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PP_3087
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PP_3087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
SMC_N
DnaJ_CXXCXGXG
AAA_16
AAA_29
AAA_25
RsgA_GTPase
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AAN68695
UniProt:
Q88IB2
LinkDB
All DBs
Position
complement(3474196..3476712)
Genome browser
AA seq
838 aa
AA seq
DB search
MPPSPTTPSGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRR
YFESVAPYARRLIDQVGVPDVDAIDGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY
SRAGHYPPGQAMLYAEDFSPNTPQGACPQCHGLGRVYEVTEATMVPDPSLTIRERAVAAW
PMAWQGQNLRDILVTLGYDVDIPWRDLPQAQRDWILFTEETPTAPVYAGLTPAQTREALK
RKLEPSYQGTFMGARRYVLHTFMHSQSAQMRKRVAQYMHPSTCPLCQGKRLKREALAVTF
AGLDIAELSHLSLQALAEVFRKVAAADYLTQQQDELTLEKRLAAQRIAKELLERIDTLLD
LGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVVYVLDEPSAGLHPADSEALFEALQ
RLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLAEVQQSCTRTYL
FDAPVQATRAPRQARDWLKLEGITRNNLDNLSAAFPLGCFTAVTGISGSGKSSLVSQALL
ELVGAHLGHAEQRSEPEAQSLEDEPEQTSSGHVSAGLGSIKRLVQVDQKPIGRTPRSNLA
TYTGLFDHVRKCFAATEQAKAQGFDAGRFSFNVAKGRCANCEGEGFVSVELLFMPSVYAP
CPTCQGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPPARRCLQVLQDIGLGYLR
LGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVESG
HSVVVVEHDMRVVAQSDWVIDIGPGAGDAGGKVVVSGTPQVVAACTDSRTATFLAKAL
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgcctccaagcccgaccaccccaagcggtttcatccgcgtccgtggcgcccgcgagcac
aacctgaagaacatcgatgtcgatatcccccgcgacgccttggtggtgttcaccggcgtg
tccggctcgggcaagtcctcgttggcgttctccacgctgtatgccgaagcccagcggcgt
tatttcgaatcggtggcaccctatgcccggcgcctgatcgaccaggttggcgtgccggat
gtcgatgccatcgatggcctgccgccggcggtggccctgcagcagcaacgcggcacgccg
agtgcacgttcctcggtgggtagcgtgaccaccttgtccagttcgatccgcatgctctat
tcccgcgctggccattacccgcccgggcaagcgatgctgtacgccgaagacttttctccg
aacacgccccagggcgcttgcccgcagtgccatggcctgggccgtgtctacgaggtgacc
gaagcgaccatggtccccgacccgtcgctgaccatccgtgagcgtgcggtggcggcgtgg
ccaatggcctggcaagggcagaacctgcgcgacatcctggtcacgctgggctatgacgtc
gatatcccttggcgcgacctgcctcaggcgcagcgcgactggatcctgttcaccgaagag
acgcccaccgcccccgtgtacgccggcctgactccggcgcagacccgcgaagcgctcaag
cgcaaactcgagcccagctatcaaggcacgttcatgggtgcccggcgttacgtgctgcat
accttcatgcactcgcagagcgcgcagatgcgcaagcgtgtggcccagtacatgcacccc
agcacctgcccgctgtgccagggcaaacgcctgaagcgcgaagcgctggccgtgaccttc
gccgggctggacatcgccgaactgtcgcacctgtcgttgcaggcgctggctgaggtgttc
cgcaaggtggcggcagccgactacctgacccagcagcaggacgagctgacactggaaaaa
cgcctggcggcccaacgcatcgccaaagaactgctcgaacgcattgatacgctgcttgac
ctcggcctcggctacctggccctggagcgcagcaccccgaccttgtcttctggtgaactg
caacgcctgcgcctggccacccagctgaattcgcagctgtttggggtggtttacgtactc
gacgagccgtcggccggcttgcacccggccgacagtgaagcgctgttcgaagccctgcag
cgcctgaaacaggctggcaactcggtgtacgtggtggagcatgacctggacaccatgcgc
cgcgccgactggctggtggatgtagggcccgctgccggcgaacacggcggcaccatcctc
tacagcgggccgcccgccggcctggccgaggtgcaacagtcatgcacccgcacctacctg
ttcgatgccccggtacaggccacacgcgccccccgccaggcccgcgactggctgaagctt
gaaggcatcacgcgcaataacctcgataacctgagcgccgcatttccgttgggctgcttt
accgccgttaccggtatttccggctcgggcaaatccagcctggtcagccaggccctgctg
gaactggtgggggcacacctgggccatgccgagcaacgtagcgagcccgaagcgcagagc
ctggaagacgaacctgaacagaccagcagcggccacgtaagcgccgggcttggcagcatc
aagcggctggtgcaggttgaccagaagccgatcggccgcacgccgcgctccaacctggcc
acctacacaggcctgttcgaccacgtgcgcaaatgcttcgcggctaccgagcaggccaag
gcacagggcttcgacgccgggcgcttttccttcaacgttgccaagggccggtgcgccaac
tgcgagggagagggtttcgtcagcgtcgagctgctgttcatgcccagcgtgtacgcgccc
tgcccgacctgccagggtgcccgctacaaccccgaaaccctggcggtgagctggcaaggc
atgaacatcgcgcaagtgctgcagttgaccgtcgaccaggccctgcaggtttttgccgag
caaccgcctgcccgccgttgcctgcaggtgctgcaggatatcggcctgggctacttgcgt
ctgggccaaccggccaccgagctgtccggtggtgaagcgcagcggatcaagctggcgacc
gaactgcagcgcatggcccgcggggcgaccctgtatgtgctggatgagcccaccaacgga
ttgcacccgcaggacatcgaccggctgctggtacaactgaaccgcctggtagaaagcggg
catagcgtggtggtggtcgaacacgacatgcgagtggtggcgcagagcgactgggtgatc
gatatcgggccgggggctggtgatgccgggggcaaggtggtggtcagtggcacgccgcag
gtggtggcggcatgtaccgacagccgcacggcgacgtttttggcaaaggccttgtaa
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