Pseudomonas putida KT2440: PP_4493
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Entry
PP_4493 CDS
T00114
Symbol
ydiJ
Name
(GenBank) putative oxidoreductase
KO
K26063
(R)-2-hydroxyglutarate dehydrogenase [EC:1.1.-.-]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu00310
Lysine degradation
ppu01100
Metabolic pathways
ppu01120
Microbial metabolism in diverse environments
Module
ppu_M00960
Lysine degradation, bacteria, L-lysine => D-lysine => succinate
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
PP_4493 (ydiJ)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD-oxidase_C
FAD_binding_4
Fer4_8
BBE
CCG
Fer4_20
DUF3297
Motif
Other DBs
NCBI-ProteinID:
AAN70068
UniProt:
Q88EH0
LinkDB
All DBs
Position
complement(5105091..5108111)
Genome browser
AA seq
1006 aa
AA seq
DB search
MIAQLSTVAPSANYPEFLEALRNSGFRGQISADYATRTVLATDNSIYQRLPQAAVFPLDA
DDVARVATLMGEPRFQQVKLTPRGGGTGTNGQSLTDGIVVDLSRHMNNILEINVEERWVR
VQAGTVKDQLNAALKPHGLFFAPELSTSNRATVGGMINTDASGQGSCTYGKTRDHVLELH
SVLLGGERLHSLPIDDAALEQACAAPGRVGEVYRMAREIQETQAELIETTFPKLNRCLTG
YDLAHLRDEQGRFNLNSVLCGAEGSLGYVVEAKLNVLPIPKYAVLVNVRYTSFMDALRDA
NALMAHKPLSIETVDSKVLMLAMKDIVWHSVAEYFPADPERPTLGINLVEFCGDEPAEVN
AKVQAFIQHLQSDTSVERLGHTLAEGAEAVTRVYTMRKRSVGLLGNVEGEVRPQPFVEDT
AVPPEQLADYIADFRALLDGYGLAYGMFGHVDAGVLHVRPALDMKDPVQAALVKPISDAV
AALTKRYGGLLWGEHGKGLRSEYVPEYFGELYPALQRLKGAFDPHNQLNPGKICTPLGSA
EGLTPVDGVTLRGDLDRTIDERVWQDFPSAVHCNGNGACYNYDPNDAMCPSWKATRERQH
SPKGRASLMREWLRLQGEANIDVLAAARNKVSWLKGLPARLRNNRARNQGQEDFSHEVYD
AMAGCLACKSCAGQCPIKVNVPDFRSRFLELYHGRYQRPLRDYLIGSLEFTIPYLAHAPG
LYNAVMGSKWVSQLLADKVGMVDSPLISRFNFQATLTRCRVGMATVPALRELTPAQRERS
IVLVQDAFTRYFETPLLSAFIDLAHRLGHRVFLAPYSANGKPLHVQGFLGAFAKAAIRNA
TQLKALADCGVPLVGLDPAMTLVYRQEYQKVPGLEGCPKVLLPQEWLMDVLPEQAPAAPG
SFRLMAHCTEKTNVPASTRQWEQVFARLGLKLVTEATGCCGMSGTYGHEARNQETSRTIF
EQSWATKLDKDGEPLATGYSCRSQVKRMTERKMRHPLEVVLQYAQR
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcccagctgtccaccgttgcaccgagcgccaattaccccgaattcctcgaagcc
ctgcgcaacagcggcttccgcggccagatcagtgccgactacgcaacccgcacggtactg
gccaccgacaactcgatctaccagcgcttgccgcaggcggcggtgttcccgctggatgcc
gacgatgtggcgcgggtcgccacgctgatgggcgagccgcgcttccagcaggtcaagctg
accccgcgcggtggtggcaccggcaccaacggccagtcgctgaccgacggtatcgtcgtc
gacctgtcgcggcacatgaacaacatcctcgaaatcaacgtggaagagcgctgggtgcgg
gtacaggccggcacggtcaaggaccagctcaatgctgcgctcaagccgcacgggctgttc
ttcgcccctgagctgtccacctccaaccgcgccacggtcggcggcatgatcaacacggat
gccagtggccagggcagctgcacctacggtaaaacccgcgaccacgtgctggagctgcac
agcgtgctgctcggtggcgaacgcctgcacagcctgccgatcgacgatgctgcgctggaa
caggcctgcgccgcgccgggccgggtcggcgaggtgtaccgcatggcccgggaaattcag
gaaacccaggccgaactgattgaaaccaccttccccaagctcaaccgttgcctgaccggc
tacgacctggcgcacctgcgcgacgagcagggccgcttcaacctcaacagcgtactgtgc
ggcgccgagggctcgctgggctacgtggtcgaagccaagctcaacgtgctgccgattccc
aagtatgcggtgctggtcaatgtgcgctacaccagcttcatggatgcgctgcgtgatgcc
aacgcgctgatggcgcacaagccgctgtcgatcgagacggtcgactccaaggtgctgatg
ctggcgatgaaagacatcgtctggcacagcgttgccgagtacttcccggcggaccccgag
cgccccacgctgggcatcaacctggtggagttctgcggcgacgagccggccgaggtcaac
gccaaggtgcaggcgttcatccagcacctgcaaagcgacaccagcgtcgagcgcctgggc
cacaccttggccgaaggcgccgaggcagtcacccgcgtctataccatgcgtaagcgttcg
gtcggcctgctgggcaacgtcgaaggcgaagtgcgcccgcagccgttcgtggaggacacc
gcagtaccaccagaacagttggccgactacatcgccgacttccgcgcactgctcgacggc
tacggcctggcctacggcatgtttggccacgtcgatgccggcgtgctgcacgtgcgcccg
gcactggacatgaaggacccggtgcaggccgcgctggtcaagccgatttccgatgccgtt
gccgcgctgaccaaacgttatggcgggttgctgtggggtgagcacggcaagggcttgcgc
tcggaatacgtgcccgagtacttcggcgaactgtacccggcgttgcagcgcctgaagggc
gcctttgacccgcacaaccagctcaacccgggcaagatctgcacgccacttggcagcgca
gagggcctgaccccggtcgatggcgtgaccctgcgcggcgaccttgaccgtaccattgac
gagcgcgtttggcaggacttccccagcgccgtgcactgcaacggcaatggcgcctgttac
aactatgaccccaacgacgccatgtgcccgtcgtggaaggccacccgcgaacgccagcat
tcgcccaaggggcgcgcctcgctgatgcgcgagtggctgcgcctgcagggcgaggcgaac
atcgatgtgctggctgcggcgcgcaacaaggtgtcgtggctcaagggcctgccggcgcgt
ctgcgcaacaaccgtgcgcgcaaccagggccaggaagacttctcccatgaagtgtacgac
gctatggccggctgcctggcgtgcaagtcgtgcgccgggcagtgcccgatcaaggtcaat
gtgccggatttccgctcgcgcttcctcgagctttaccacggtcgctaccagcgcccgctg
cgtgactacctgatcggctcgctcgagttcaccatcccctacctggcgcacgcgccgggg
ctgtacaacgcggtgatgggctcgaagtgggtgagccagctgctggccgacaaggtgggc
atggtcgacagcccgctgatcagccgcttcaacttccaggctaccctgacccgttgtcgc
gttggcatggccacggtgccggccctgcgcgagctgaccccggcccagcgcgagcgcagc
atcgtgctggtgcaggacgccttcacccgctacttcgaaacgccgctgctgtcggccttc
atcgaccttgcccaccgcctgggccaccgggtattcctggcgccgtacagcgccaacggc
aagccgttgcacgtacagggtttccttggcgcgtttgccaaggcagcgatccgcaacgcc
acgcagctcaaggccctggccgattgcggtgtgccgctggtggggctggacccggcgatg
acgctggtgtatcgccaggagtatcagaaagtgccaggcctggagggttgcccgaaggtg
ctgctgccgcaggaatggttgatggatgtgctgcccgagcaggcgcctgccgcaccgggc
agcttccgcctgatggcgcactgcaccgagaagaccaatgtgccggccagcacccggcag
tgggagcaggtgttcgcccgtctggggctgaagctggtgaccgaggccaccggttgctgt
ggtatgtccggtacctatgggcacgaagctcgcaaccaggaaacgtctcggaccatattc
gagcagagctgggcgaccaagctggacaaggacggggagccgctggcaaccggttattcg
tgccgtagccaggtcaagcgcatgaccgagcggaagatgcgtcacccgcttgaggtggtg
ttgcagtacgctcagcgctga
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