Pseudomonas putida KT2440: PP_4546
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Entry
PP_4546 CDS
T00114
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppu
Pseudomonas putida KT2440
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppu03019
]
PP_4546 (hrpA)
Enzymes [BR:
ppu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PP_4546 (hrpA)
Messenger RNA biogenesis [BR:
ppu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PP_4546 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_25
ABC_tran
T2SSE
ResIII
AAA_30
NACHT
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AAN70119
UniProt:
Q88EC0
LinkDB
All DBs
Position
complement(5163974..5167879)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHCLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDNLPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAPII
EVSGRTFPVDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKQFLNYLRLREWRDAHRQ
LALICRDLQLTVNKEPTDYQKLHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHYGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLGELDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSMQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVSDEAWD
ESVNQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKGEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPREGAALAALAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGVWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgattgccgac
cgccattgcctgcgccggcaactgcacgaactgcgcaagcgccccgacgaggcgaagctg
gcgcagtgggtggagaaggtccaggcctcctgcgctcaggtcaccgcgcgtcagcagagc
gtgccgaccgtacgctacgacgacaacctgcccatcgccgccaagcgtgacgaaatcaag
aaggccctggccgaaaaccaggtattggtgatcgccggcgaaaccggctctggcaagacg
acccagttgccgaaaatctgcctggagcttggccgtggcagccatgggttgatcgcccat
acccagccacgcaggatcgcagcgcgtagtgtggccgcgcgagtcgctgaagagctgggc
acgcccctgggcgcgctggtcggctaccaggtgcgtttcgaagaccagagcgattccaat
accttggtcaagctgatgaccgacggcattctcctggccgaaacccagcatgaccgcttc
cttgaacgctatgacacgatcatcgtcgacgaagcgcacgagcgcagcctgaacatcgac
ttcctgctcggctacctgaaaacgttgctgcatcgccgaccggacctgaaactgatcatc
acctcggccaccatcgacctggagcgcttctccaggcatttcgacggtgcgccgatcatc
gaggtgtctgggcgcaccttcccggtggacacctggtaccgcccgctgaccagcgagcag
gacgaagagggcaaccagatcgaggacgacctcaccgtcgatcaggccatccttgccacc
ctcgacgagctggcgcagcacgaacgcagcgagggcaagggcccgggcgatgtgctgatc
ttcctgccgggcgagcgggaaatccgtgatgccgccgagatcctgcgcaaggcgcaactg
cgccataccgagattttgccgctgtacgcgcgcctgtcaccggccgagcagcagcgtatc
ttccaaccgcacaccgggcgccgcgtggtgctggccaccaacgtcgccgaaacctcgctg
accgtgcctggcatccgctatgtgattgacaccggtactgcgcgcatcagccgctacagc
taccgcgccaaggtccagcgtctgccgatcgaggccgtgtcacaggccagtgccaaccag
cgtaaaggccgttgcggccgggtcgagccgggcatttgcgtgcgtctctacagcgaagag
gacttcaacagccggccagcgtttaccgacccggagattctgcgcaccaacctggcggcg
gtgatcctgcagatgttgcacctgcgcctgggcgcaatcgatgccttcccgttcatcgag
ccgccggatggcaaagccatcagcgacggcttcaacctgttgcaggagctttcggcggtt
aaccgcgagaaccagctgacgccaattggccgccagttggcgcgcttgccgatcgacccg
cgtctgggccgcatgctgcttgaaggcgcgcgcctgggcagcctgcaggaagtgctgatt
gtcaccagcgcgctgtcggtgcaggacccgcgtgaacgccccccagaacgccagcaggcc
gccgatcaggcgcacgcacagtggaaggacgtggactcggacttcgctgcgctggtcaac
ctgtggcgtggcttcgaggaacaacgccaggcgctgaccgccaacccgctgcgcaactgg
tgtcgcaagcagttcctgaactacttgcggctgcgcgagtggcgcgatgctcatcgtcag
ttggcgctgatttgccgtgacctgcagctgacggtgaacaaggaaccgaccgattaccag
aagctgcacaaggcaatcctcagcgggctgctcagccagattggccagaagaccgaagag
ggcgactaccagggcgcccgtcagcggcgcttctgggtgcatccatcttcgggcctgggg
cgcaagcgcccgcagtgggtcatggctgccgagctggtcgaaaccaccaagctgtatgcg
cgcatggtggccaagatcgagccggactggatcgagccgctggccggccacctgatcaag
aagaaccatttcgagccgcactgggagaagaagcgcgggcaggtggtggcctacgagcag
atcacgctctacgggctgatcctggtcggccgtcggccggtgcactacggcccgatcgac
ccggcgacctcgcgcgagctgtttatccgtgaaggcctggtgggtggcgaaatccagtcg
cgggccaagtgcctggcggccaacaaacgcctgcttggagagctggacgagctggaagcc
aaggctcgccggcgtgacatcctggctgacgaagaaacgctgtacgctttctatgaagcg
cgcctgccggcggaaatccaccagacggcgacctttgatagttggtaccgcatgggcagc
caaaaggacgccaacctgctgatcatgcgcgaggaggacgtgctggcccgcgaggccagc
gaagtgaccgccgcacagtaccccgacagtatgcaggtgggcgatctgcgcctgccgctg
agctaccacttcgagcccggccacccccgtgatggtgtgacggtgcgggtgccggcaccg
ctgttgccgagcctgccgggcgagcgcctggagtggctggtgccgggcctgctggaggcc
aagtgcgtggcgctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtcccggtg
ccagacttcgtcaaggcttcgctggcgcgcatgaccttcggccaaggggcgctgccacag
gccctgggccaggagctgctgcgcatgaccggtgcacgtgtgtcggacgaggcctgggac
gagtcggtcaaccaggtcgagggccacctgcgcatgaacatcgaagtggtcgatggccag
ggcaagttccttggcgaaggccgcgacctggcggaactgaccgcgcgctttgctgccgcc
agccaggctgccctggccgtgccgcgtgacgccaagggtgagcagccggtgcaggccaag
gccttcagcgaagtgaaacagaccgcccagcagaagatcgccggcctgtcgatgaccgtg
tacccggcactggtggaagacaacggcactgtgcgtgaagggcgtttctcgacccaggcc
gaagcggagtttcagcaccgccgcgccttgcaacggctgttgctgcagcaactggccgag
ccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgctgtaccgt
gaaatggggcgggtagaagcgctggtcgaagacattctgctggccagcctggacagttgc
atccttgaaggcgaacaaccgttgccacgtgaaggtgcggccttggccgcgctggctgaa
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcaaggcagaccctggaagtg
ctgaagctgtggcatggtctgcagaaacgcttcaagggcaagatcgacctgagccaagcg
gtggcactgaacgacatcaagcagcagctaggcaacctggtgtacccgggcttcgtacgc
gaaacgcctggggtgtggttcaaggagttgccgcgttacctcaaggcggttgaattgcgc
ctcgagaaactcggctcgcaagtacagaaggaccgggtgtggagcggcgaattggccaac
ctgtgggcgcagtacaaggcccgtgccgacaagcatgcccaggaaggcaagcgcgatgag
caactgaccgtgtaccgctggtggctggaagaatatcgagtgtcgctgtttgcccagcag
ttggggaccaaggtgccgatttctgacaagcgattgagcaaacaatggagtcaggtggaa
ggctaa
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