Pseudomonas putida KT2440: PP_4672
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Entry
PP_4672 CDS
T00114
Symbol
recD
Name
(GenBank) ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PP_4672 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppu03400
]
PP_4672 (recD)
Enzymes [BR:
ppu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PP_4672 (recD)
DNA repair and recombination proteins [BR:
ppu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PP_4672 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
Helicase_RecD
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
AAA_16
SLFN-g3_helicase
TraI_hel_assoc_N
AAA_28
T2SSE
AAA_17
nSTAND3
PhoH
NTPase_1
AAA_5
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AAN70245
UniProt:
Q88DZ6
LinkDB
All DBs
Position
complement(5298026..5300101)
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AA seq
691 aa
AA seq
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MSRSLVDLLPTPLHAEHLLALAPQHNSADLLQLLDRWVERGWLRALDRAFVSFLEERAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLD
LNAWLQRISASPLVAAGDTPGQQARPLVRSGERLYLRRYWSYERRIDQALRQRLSQAEAP
PADLPERLAQLFEGGAPAGQVDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTEVSTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGFYSPATAAWLQQVSGESLAGSGLKAGDEQRHPLAQQVVMLRFSRRFGE
GSGIGQLARLVNRQDAHAARNLLAAPPADVHSLSLKHEQDRAFDRLLLDGLNRGTDGPQG
YRSYLRTLGRYRPALDTAFDDPAWEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDEHGQPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPEALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagccttgtcgacctgttgcccaccccgttgcacgcagagcacctgctggcg
ctggcaccgcagcacaacagcgctgacctgctgcaattactcgaccgttgggttgagcgg
ggctggctacgtgccctggaccgcgcattcgtgtcgttcctggaagagcgcgcccccggc
agtgatcccttgctattgctggcggcagcgctggccagccaccaactggggcacggacat
gtctgcctcgacctgcaacaaaccttggccgagcctgatttcgccctgtcgttgccgccg
gaaggtgacgcccttatcggccctttgctactgccatcgcaactgctggccaaccttgac
ttaaatgcctggcttcagcgcatcagcgccagcccgctggtggccgcaggtgatacgcct
ggccagcaagcgcggccgcttgtacgcagtggcgagcgcctttacctgcgccgttactgg
agttacgagcggcgcatcgaccaggccctgcgccagcgcctgagtcaggccgaagcaccg
cctgcggacctgccagagcgtctggcgcaactgttcgagggcggcgcgccagctggccag
gtggactggcagaagctcgcctgtgccttggccacccgtgccggtttcagcatcatcact
ggcggccccggtactggcaagacgaccaccgtggtgcgcctgctggcgttgctgcaggcg
ccggcagtggagcagggcaggccactgcgcatccgcctggctgcaccgaccggcaaagcc
gctgcgcgcctgaccgaatccattggtcagcaagtcgagcgcctgcaagtcagcgccgaa
gtacgtgggcaaatccccactgaagtcagcaccgtgcatcgcctgctcggcagccgcccg
ggctcgcggcactttcgccatcatgctggcaacccgttgccgttggatgtgctggtggtc
gacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgccttgccgccg
cgggcgcgtctggtgctgctgggcgacaaggaccagttggcctcggtcgaggccggcgcg
gtgctgggtgacctgtgccgggatgctgaggagggcttttactcgccggcgactgcagcg
tggcttcagcaggtcagtggcgagtcgctggccggcagtggccttaaggccggcgatgag
cagcgtcacccgctggcccagcaggtggtgatgctgcgtttttcacggcgtttcggtgaa
ggcagcggtattggccagctggccagactggtcaatcgtcaggacgctcacgcggcgcgc
aacctgctggccgcgccgcctgccgacgtgcacagcctttcgctcaagcacgaacaggat
cgtgcgttcgaccgcctgttactcgacggcctgaaccgcggtaccgatggaccgcaaggc
taccgcagctacctgcgcacccttggccgttaccggccggcacttgataccgcctttgac
gaccccgcctgggagcaatgggcgggcaaggtgttgcgcagttttgaggatttccagttg
ctgtgcgcggtgcgccggggcgcctggggtgtcgaaggcctcaacgagcgggtggcgcga
gtgctgcacaatgccggtctgatcgacagccagcagccctggtacgaagggcgcccggtg
ctggtgacccgcaacgactacggccttggcctgatgaacggtgacatcggtattgccctg
cgcctgccggatgagcatggccagccgctgctgcgcgtggccttcccgcgcaacgacggc
agtggtggtgtgcgattcgttctgccgagccggctcaacgaagtggagacggtattcgcc
atgaccgtgcacaagtcccagggctcggagttcagccacactgccctggtgctgccggag
gcgctcaacccggtgctgaccaaggaactggtgtacaccggcatcacccgggccaagcac
tgcttcagcctggtcgagccacgccaaggcattttcgaagaagcggtggcgcgcaaagta
cggcgtatttccgggttgatgctcgagcaggtctag
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