Pseudomonas putida KT2440: PP_4708
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Entry
PP_4708 CDS
T00114
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP_4708 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppu03019
]
PP_4708 (pnp)
03016 Transfer RNA biogenesis [BR:
ppu03016
]
PP_4708 (pnp)
Enzymes [BR:
ppu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PP_4708 (pnp)
Messenger RNA biogenesis [BR:
ppu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PP_4708 (pnp)
Transfer RNA biogenesis [BR:
ppu03016
]
Prokaryotic type
tRNA degradation factors
PP_4708 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
TraK_C
OB_RRP5_4th
S1_2
KH_PNO1_2nd
S1_TP0910
Motif
Other DBs
NCBI-ProteinID:
AAN70281
UniProt:
Q88DW0
LinkDB
All DBs
Position
complement(5352011..5354116)
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AA seq
701 aa
AA seq
DB search
MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTSDAVLMVESEAQELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWKPAVAN
TELFNAIRAEFGEAVSQGYTITVKADRYARLGELRDQAVAKFSGEEGQPSASEVKEIFGE
IEYRTVRENIVNGKPRIDGRDNKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
VIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVPAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagactttccagttcggtcaatcgaccgtcactctcgaaacgggc
cgtattgcccgtcaggcaaccggcgccgtgctggttaccgtcgacaacgacgtcaccgtg
ctggtgactgtggtaggcgccaaacaggctgatccaggcaagggtttcttcccgctgtcg
gttcactaccaggaaaagacctacgccgctggcaagatcccaggtggcttcttcaagcgt
gaaggccgtccttccgagaaagagacgctgacctcgcgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggtcgtctgcaccgtggtttccacc
agcaagaagaccgacccggacatcgctgcgatgatcggtacctcggctgccctggccatt
tccggcattccgttcgaaggcccgatcggcgctgcccgcgttgccttccacgaaagcact
ggctacctgctgaacccgacctatgagcaactggctgcctcgagcctggacatggtcgtt
gccggtacctccgacgctgtactgatggttgaatcggaagctcaagagctgaccgaagac
cagatgctgggtgccgtactgttcgcccacgacgaattccaggctgttatccaggctgtc
aaagagctggctgccgaagctggcaagccgacttgggactggaaacctgccgttgccaac
accgagctgttcaatgctatccgcgccgagttcggcgaagcggtttcgcagggttacacc
atcaccgtcaaagccgaccgctacgcgcgtctgggtgagctgcgtgaccaggcggttgcc
aagttctccggtgaagaaggccagccttcggcttccgaagtaaaagagatcttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggccgc
gacaacaagaccgtacgcccgctgaacatcgaagtgggtgtgctgccaaaaactcacggt
tcggcactgttcacccgtggcgaaacccaggccctggtcgttgcgaccctgggtactgcc
cgtgatgcccagctgctggacaccctcgaaggcgagaagaaagaccccttcatgctgcac
tacaacttcccaccgttctcggtaggtgagtgtggccgcatgggcggtgctggccgtcgc
gaaatcggccacggccgtctggcccgccgttcggttcaggccatgctgcctgctgctgac
gtgttcccgtacaccatccgcgtggtttcggaaatcaccgaatccaacggttccagctcc
atggcttcggtctgcggtgcttccctggccctgatggacgccggtgtgccgatgaaggcg
ccggttgccggtatcgccatgggcctggtcaaggaaggcgacaagttcgcagtcctgact
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aaaggcgtcaccgcgctgcagatggacatcaagatcaacggcatcaccgaagagatcatg
gaaatcgccctgggccaagccctggaagcgcgcctgaacatcctcggccagatgaaccag
gttattggccagtcgcgtaccgaactgtcggccaacgccccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgtcatcggtaaaggcggcgccaccattcgcgccatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggcagatgctgccaagcagcgcatcctgggcatcaccgctgaggcc
gagatcggcaagatctacgtcggcaaggttgagcgcattgtcgacttcggcgccttcgtc
aacatcctgcctggcaaggacggtttggtgcacatctccatgctgagcgatgctcgcgtc
gagaaagtcaccgacatcctcaaggaaggccaggaagttgaagtgcttgtactggacgtg
gacaaccgcggccgtatcaagctgtcgatcaaagacgtccctgcggccaaggcctcgggc
gtctaa
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