Pseudomonas putida KT2440: PP_4980
Help
Entry
PP_4980 CDS
T00114
Symbol
rhlE-II
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PP_4980 (rhlE-II)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppu03019
]
PP_4980 (rhlE-II)
Enzymes [BR:
ppu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PP_4980 (rhlE-II)
Messenger RNA biogenesis [BR:
ppu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PP_4980 (rhlE-II)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAN70546
UniProt:
Q88D48
LinkDB
All DBs
Position
5672758..5674638
Genome browser
AA seq
626 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGR
KDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPPADRDPEEF
LDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRS
GGGEKRPPRANNGGGARRDGGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESKLDR
FPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tacacccagccgacccccgtgcaacagcgggctattcccgccgtgttgcaaggccgcgac
ctgatggttgccgcacagacaggtacgggtaaaaccggcggctttgccctgccgattctc
gagcgcctgttcccggccggccatcccgacaaatcacagcgccacggcccgcgccagcct
cgcgtgctggtcctgacgccgacccgcgaactggcagcccaggtgcatgacagtttcaag
gtctatgcccgtgacctgccactggtcagcgcctgcatcttcggcggcgttggcatgaac
ccgcagatccaggccattgccaaaggcgttgatgtgctggtcgcctgcccaggccgcctg
ctcgacctcgccggccaaggcaaggtcgacctggcccacgtggaaatcctggtacttgat
gaagccgatcgcatgctcgacatgggcttcatccacgacgtcaagaaggtcctcgcccgc
ctgccggccaaacgccagaacctgctcttctcggccaccttctccaaggacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgtatcgaggtcaccccgccgaacaccacc
gtcgagcgtatcgagcagcgggtatatcgcctgcctgccagccacaagcgtgccttgctg
gcgcacctgatcaccctgggcgcctgggaacaggtgttggtgttcacccgaaccaagcat
ggcgccaaccgcctggccgagtacctggaaaagcaaggcctgaccgccgccgcgatccac
ggcaacaagagccagaacgcccgcaccaaggcgctggccgacttcaaggccaacagcgtg
cgcgtactggtcgccaccgacatcgctgcccgcggcctggacatcgaccagttgccccat
gttgtcaacttcgagctgccgaatgtcgaggaagactacgtccaccgcatcggccgtacc
ggccgtgccggtcgttcgggcgaagctatttccctggtcgcgccagatgaagagaagctg
ctcaagagcatcgagcgggtgaccaagcagcgcatcgcggatggcgacctgatgggcttc
gacgccagccaggtagaagccgagaagcccgaagcacgcgagcgcccgcagaataacggc
cgcggtggccgcaaccagcaggcccgtggcgaaggtggtaaagacaccaacggcggccgc
aaggacaaaggcaaggacaaaggcaaagccaggcagcaagctgcggccaagccggacgac
aaggaaaagagcggcgacaagcagcaaccgcgcaagccgcgtgacaagaagtcacgcccg
cagcaggccagcaataacagcgtgccgaagccgccggcagaccgcgacccggaagagttc
ctggacgacgaactcgataacttcggtaaccgcgcggactatgtcagcccttaccagggc
aagaaccagggccgcaaccgccgcccgggtggtgctggccaaggtcaggggcaaggcaat
ggccaacgcagcaacgctggcggccagggccaagcccgcaatggcggccagccacgcagt
ggtggcggagaaaaacgcccgccccgcgccaacaacggtggcggtgcccgtcgtgatggc
ggcggtggccgtggtcgccctgcgcgtgacgatgctgcccggcaagagccggccgtgcgc
aacccgcgtcagccggaaaaacagccagtgatcattcgcaaggagtccaagctggaccgt
ttcccgacgcctgagcaactggatgacctgccaagccgcccacgcggtgagcgcccagcg
ctgctgacccgcaagggctga
DBGET
integrated database retrieval system
