Pseudomonas putida KT2440: PP_5260
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Entry
PP_5260 CDS
T00114
Symbol
ydcJ
Name
(GenBank) metalloprotein, putative enzyme
KO
K25986
2-oxoadipate dioxygenase/decarboxylase [EC:
1.13.11.93
]
Organism
ppu
Pseudomonas putida KT2440
Pathway
ppu00310
Lysine degradation
ppu01100
Metabolic pathways
ppu01120
Microbial metabolism in diverse environments
Module
ppu_M00960
Lysine degradation, bacteria, L-lysine => D-lysine => succinate
Brite
KEGG Orthology (KO) [BR:
ppu00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
PP_5260 (ydcJ)
Enzymes [BR:
ppu01000
]
1. Oxidoreductases
1.13 Acting on single donors with incorporation of molecular oxygen (oxygenases)
1.13.11 With incorporation of two atoms of oxygen
1.13.11.93 2-oxoadipate dioxygenase/decarboxylase
PP_5260 (ydcJ)
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Gene cluster
GFIT
Motif
Pfam:
HGLS
Motif
Other DBs
NCBI-ProteinID:
AAN70825
UniProt:
Q88CC1
Structure
PDB
PDBj
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All DBs
Position
6005138..6006532
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AA seq
464 aa
AA seq
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MPANDFVSPDSIRAQFSAAMSLMYKQEVPLYGTLLELVSEINQQVMAQQPEVAEALRWTG
EIERLDQERHGAIRVGTAEELATIARLFAVMGMQPVGYYDLSSAGVPVHSTAFRAVHEQS
LHVSPFRVFTSLLRLELIDNPQLRELAQSILAKRQIFTSRALELIAQCEREGGLDAADAE
TFVQEALHTFRWHQDATVTAEQYQQLHDQHRLIADVVAFKGPHINHLTPRTLDIDAIQLG
MPAKGIPPKAVVEGPPTRRHPILLRQTSFKALQETVAFRDQQGREGSHTARFGEIEQRGA
ALTPKGRQLYDKLLDATRVALGGAPAEANAERYMALLQANFAEFPDDLAQMREQGLAYFR
YFATEKGLAARDQEGRPTTLQGLIDAGHVHFEALVYEDFLPVSAAGIFQSNLGDDAQAEY
GSNANREAFEAALGLQVQDELALYAQSERRSLQACAQALNLGSM
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccaacgatttcgtcagcccagacagcatccgcgcgcagttctctgccgccatg
tcgctcatgtacaaacaggaagtgccgctgtacggcacgctgctggagctggtgagcgaa
atcaaccagcaggtgatggcccagcaacccgaagtggcagaggccctgcgctggaccggc
gaaatcgagcgcctggaccaggaacgtcacggcgccatccgcgtcggcaccgccgaagaa
ctggccaccatcgcccgcctgttcgccgtcatgggcatgcaaccggtcggctattatgac
ctcagctccgctggcgtaccggtgcattccactgcctttcgcgcggtgcacgagcaatcg
ctgcatgtcagcccgttccgtgtgttcacctcgctgctgcgcctggagctgatcgacaac
ccgcagttgcgcgagctggcacagagcatcctggccaagcgccagatcttcacctcccgc
gccctcgaactgatcgcccagtgtgagcgcgagggtggccttgacgccgcggatgcagag
acgttcgtgcaggaagcgctgcacaccttccgctggcaccaggacgctaccgtcacggcc
gagcaataccagcagctgcacgaccaacaccgcctgatcgccgatgtggtggccttcaag
ggcccgcacatcaaccacctgaccccgcgtaccctggatatcgatgcaatccagctcggc
atgcctgccaagggcatcccgccgaaggccgtggttgaaggcccgcccacccgccgccac
ccgatcctgctgcgccagaccagcttcaaggccctgcaggaaacggtcgccttccgcgac
caacaaggccgcgaaggcagccacaccgcacgctttggcgaaatcgagcaacgcggcgcg
gcgctgacgccgaaaggtcgccagctttacgacaagttgctcgacgctacccgcgttgcg
ctgggtggcgctccggccgaagccaatgccgagcgttacatggcgctgctacaggcaaac
tttgccgagttcccggatgacctggcgcaaatgcgcgaacagggcctcgcatatttccgc
tacttcgccaccgagaaaggcctggccgcacgcgaccaggaaggccgcccgaccaccctg
caaggcttgatcgacgcgggccacgtgcacttcgaggcgctggtgtacgaggacttcctg
ccggtgagtgcggcggggatcttccaatccaacctgggcgacgatgcgcaggccgaatac
ggcagcaacgccaaccgcgaagcgttcgaagcggcgctggggttgcaggtacaggatgag
ctggcgctgtatgcgcaaagcgagcgccggtcgctgcaggcctgtgcacaggcgttgaac
ctgggttcgatgtaa
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