Pseudomonas putida DLL-E4: DW66_0396
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Entry
DW66_0396 CDS
T03439
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppud
Pseudomonas putida DLL-E4
Pathway
ppud02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DW66_0396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppud03021
]
DW66_0396
Transcription machinery [BR:
ppud03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DW66_0396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AHZ74922
UniProt:
M1LXR4
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All DBs
Position
complement(445196..447046)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDYILSEYDRVTSEGGRLSDVLSGYIDPDDNIAAPTEE
VPIPGTKAAAAKEESDDDEDESESGDDEEEAESGPDPEVARQRFGAVNDQLQATNKVLKK
NGRTHQESIDALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARM
PRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDLETETGLTVAE
IKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttctgttggcggaagccgacaccgacgaagccgcggccgaa
gaagccgctgctgcgttggcggcagttgaaaccgatatcggccgcacgaccgacccggtg
cgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgtatcgaggaaggcatccgtgaagtcatgggcgccatcgctcacttcccg
ggcactgtcgactacattctcagcgaatatgaccgtgtcaccagcgaaggcggccgtctg
tcggacgttctcagcggttacatcgatcctgacgacaatatcgccgcgccgaccgaagaa
gtgccgatcccgggcaccaaggccgccgctgcgaaggaagagtccgacgacgacgaggac
gaatccgaaagcggtgacgacgaggaagaggccgagagcggcccggacccggaagtcgcc
cgtcagcgtttcggcgcggtcaacgaccagcttcaggccaccaacaaggttctgaagaag
aatggtcgcacccaccaggaaagcatcgacgccctgcaggccctggccgatttgttcatg
ccgatcaagctggtaccgaagcagttcgaggtactggtagagcgtgttcgtgacgccctg
aaccgcctgcgccagcaggaacgcgccatcatgcagctgtgcgtgcgtgatgcccgcatg
ccgcgtgccgacttcctgcgcatgttcccgagcaacgaaaccgaccagacctggagcggt
gacctggccaagcgcaacaccaaatgggctgccgccctgggtgaaaaggacgctgccatc
gtcgcttgccagcagaagctgatcgaccttgagaccgaaaccggcctgaccgttgccgag
atcaaggaaatcaaccgtcgcatgtcgatcggtgaagccaaggcccgccgcgccaagaaa
gaaatggtcgaggcgaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcttgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaagcggtggac
aagttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggatccgccag
gcgatcacccgttcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgagcgcatggaaatgcctgaggacaagatccgtaaggta
ctgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagattcg
cacctgggcgacttcatcgaggactcgaccatgcagtccccgattgacgtggccacggtc
gaaagcctcaaggaagccactcgtgacgtgctctcgggcctgaccgcacgcgaagccaag
gtgctgcgtatgcgcttcggtatcgacatgaacaccgaccacaccctcgaagaggtgggc
aagcagttcgacgtgacccgcgagcggatccgtcagatcgaagcgaaggcgttgcgcaaa
ctgcgccacccgactcgcagcgagcatctgcgctccttcctcgacgagtga
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