Pseudomonas putida DLL-E4: DW66_0540
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Entry
DW66_0540 CDS
T03439
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppud
Pseudomonas putida DLL-E4
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppud03016
]
DW66_0540
Enzymes [BR:
ppud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DW66_0540
Transfer RNA biogenesis [BR:
ppud03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DW66_0540
Prokaryotic type
tRNA splicing ligases
DW66_0540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PRMT5
Motif
Other DBs
NCBI-ProteinID:
AHZ75064
LinkDB
All DBs
Position
589178..590383
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AA seq
401 aa
AA seq
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MDILQVAGGKPVKLWTDGVPVEDDARKQLLNTARMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRNAIEHAVPHGKTFGKRDQGAW
ADVPAKADKAWGQLAGRFKAITDKYPRLEKTNNRHHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHLANLPDKDLAYFEEGSRHFADYVEAVEWAQDYA
RQNRELMMLAVVGAARKALGKPFEASLEAVNCHHNYVQREQHFGREVLVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKSRFTVEDQRRATAHVECR
KDKEVIDEIPMAYKDIDAVMRAQQDLVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggacattctccaggtcgccggcggcaagccggtcaagttgtggaccgacggcgtaccg
gtggaagacgacgcccgcaagcaactgctcaacacggccaggatgccgttcatcttcaag
cacctggctgtgatgccggacgtgcatctgggcaaaggctcgaccatcggcagtgtgatc
cccacggttggcgcgatcattcccgccgcggtgggtgtggatatcggctgcggaatgatc
gccgcgcgcacgtcgctgcacgcccgtgacttgccggacaacctgcatggcctgcgcaat
gccatcgagcacgccgtgccgcatggcaagaccttcggcaaacgtgaccagggcgcctgg
gccgatgtgccggccaaggcggacaaggcctgggggcagttggccgggcgcttcaaggcc
atcaccgacaagtacccgcgcctggagaagaccaataaccgccatcacctggggacgctg
ggcggcggcaaccacttcatcgaggtgtgcctggacgaggccgaccgcgtctggttcatg
ctgcacagcggctcccggggcgtgggcaatgccatcggcaacctgttcatcgaactggcc
caggccgacatgcgccagcacctggccaatttgccggacaaggacctggcgtatttcgag
gaaggcagccgccatttcgccgactacgttgaagcggtggagtgggcgcaggactacgcc
aggcagaaccgcgagctgatgatgctggcggtggtcggtgcggctcgcaaggcgctcggc
aaaccgttcgaggccagcctggaagcggtgaactgccaccataactatgtgcagcgcgag
cagcattttggccgagaggtgctggtgacgcgcaagggggcggtgtcggcgcagaaaggg
cagttgggcatcattcccggctcgatgggggccaagagcttcatcgtgcgagggctgggc
aacgaggaatcgttctgttcctgcagccatggtgccggccgggtgatgagccggaccaag
gccaagagccgcttcaccgtggaagaccagcggcgggccacggcgcatgtggaatgccgc
aaggacaaggaggtgatcgacgagatccccatggcctacaaggacatcgatgcggtgatg
cgcgcgcagcaggacttggtggaggtggtgcacaccttgcggcaggtggtgtgtgtgaag
ggctga
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