Pseudomonas putida DLL-E4: DW66_1076
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Entry
DW66_1076 CDS
T03439
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ppud
Pseudomonas putida DLL-E4
Pathway
ppud03410
Base excision repair
ppud03430
Mismatch repair
ppud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DW66_1076
03430 Mismatch repair
DW66_1076
03440 Homologous recombination
DW66_1076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppud03400
]
DW66_1076
DNA repair and recombination proteins [BR:
ppud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DW66_1076
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DW66_1076
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DW66_1076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AHZ75597
LinkDB
All DBs
Position
1180228..1181937
Genome browser
AA seq
569 aa
AA seq
DB search
MRIEPRPLPPTLPFLGNLPPLLTRLYAARGVQSEAELDKSLARLLPYQQLKGIEAGVDLL
VEAIDQRQRILIVGDFDADGATASTVGVLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV
ALQRQPQLLITVDNGISSVDGVAAAKAAGLKVLVTDHHLPGAELPDADAIINPNQPGCSF
PSKALAGVGVIFYVLMALRARLRSLGRYETQPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGLKAILEVARRDHRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDAALAQDMAQQLDDLNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDADWHQG
VIGILASRLKERYHRPTIAFADAGEGMLKGSARSVPGFHIRDALDAVAARHPHLISKFGG
HAMAAGLSLPEANFPAFAEAFDEEVRRQLREEDLTGRLLSDGSLAVEEFHLDLAKALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVRLDGIAFGIDREVWPNPTVR
WVELAYKLDVNEFRGNESVQLMIAHMEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcgaacctcgcccgctgccgcccaccctgccattcctgggtaacctgccaccc
ttgctgacccgcctgtacgccgcgcgcggcgtgcagagcgaggccgagctggacaaaagc
ctcgcgcgcctgctgccgtaccagcagctcaagggcatcgaggccggcgtggatctgctg
gtcgaggctatcgaccagcgccagcgcatcctcatcgtcggcgacttcgatgccgacggc
gccactgccagtactgtcggcgtgctgggcctgcgcctgctgggcgcggcccacgtcgac
taccttgtgcccaaccgcttcgagtacggctacggcctgaccccggagatcgtcgaggtg
gcgctgcaacgccagccgcagctgctgatcaccgtggacaatgggatttccagcgtcgac
ggtgtggcagccgccaaagccgccgggctcaaggtgctggtcaccgaccaccacctgccg
ggcgcggagttgcccgacgccgacgccatcatcaaccccaaccagccgggctgtagtttc
ccgagcaaggcgctggctggggtaggggtgatcttctacgtgctgatggccctgcgtgcg
cgtctgcgcagcctgggccgctatgaaacgcagccgcagccgaacatcggcgaattgctc
gacctggtggccctgggcagcgtcgcggacgtggtgccattggatgccaacaaccgcatc
ctggtgcaccagggcctcgaacgcattcgtgccggccgcgcccgaccggggctgaaggcc
attcttgaagtggcccgtcgcgatcatcggcgcatcacctcgactgacctcggcttcatc
cttggcccgcggctgaatgctgccgggcgcctggacgacatgagcctgggcatcgaatgc
ctgctgtgtgaagacgcggccctggcccaggacatggcccagcagctggacgacctgaac
caggaccgcaagtccatcgaacagggcatgcagcgcgaggccctggcccagctcaaggac
ctgcctgtcgagtcgatgccatatggcctgtgcctgttcgatgccgactggcaccagggg
gtaatcggtattctggcttcgcgcctgaaggagcgttaccaccggccgaccatcgctttt
gccgacgctggcgagggcatgctcaaagggtcggcgcgttcggtgccggggttccatatt
cgcgatgcgctggatgcggtggcggcgcgccacccgcacctgatcagcaaattcggcggc
cacgcgatggcggcggggttgtcgttgcccgaggccaatttcccggcatttgccgaggcg
ttcgatgaagaagtacgacgccagctgcgcgaagaggacctgaccggtcggctgttgtcc
gacggcagcctggcggtggaggagttccacctcgacctggccaaggccctgcgccatgcc
gggccctgggggcagcacttccccgagccgctgttccatggcgtgttccagctggtggag
caacgcgtggtgggcgagcggcacctgaaggtggtgctcaagagcgagtgcggctcggtg
cggttggacggcattgcctttggcattgaccgcgaagtgtggccgaacccgacggtgcgt
tgggtcgagctggcgtacaagctggatgtgaacgagtttcgtggtaatgaaagtgtgcag
ttgatgattgcccacatggagccccgttga
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