Pseudomonas putida DLL-E4: DW66_1792
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Entry
DW66_1792 CDS
T03439
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppud
Pseudomonas putida DLL-E4
Pathway
ppud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DW66_1792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppud03019
]
DW66_1792
03009 Ribosome biogenesis [BR:
ppud03009
]
DW66_1792
Enzymes [BR:
ppud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DW66_1792
Messenger RNA biogenesis [BR:
ppud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DW66_1792
Ribosome biogenesis [BR:
ppud03009
]
Prokaryotic type
rRNA helicases
DW66_1792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AHZ76311
LinkDB
All DBs
Position
1935858..1937537
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AA seq
559 aa
AA seq
DB search
MTQETGGFAALDLNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAS
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIEQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEATHGELFDRLTADLGCSARAL
AAALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERSERGDRERRAPMPLAE
GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSK
LKDTRVAGKQLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatctcaatccgaatattgttgctgcc
gttctggcgaccggctacgaagagccgtccgccattcagcaacaatcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgatgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagttgctacagctttcgaaacctacgccaagcag
atgccgggcgtgaacgtggtcgccgtctacggtggtgccccgatgggcccacagttgcgt
gcgatccgcaacggcgcgcaaatcgtcgtggccacccctggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctgtcgaccgtgcagtacctggtactggacgaagccgacgag
atgctcaagctgggcttcatggacgacctcgaagtgatcttcgatgccatcccggccagc
cgccagaccgtgctgttctccgccaccttgccgtcgtcgatccgctcgatcgccgaacgc
cacctgcgcgagcccaagcacgtcaagatccagagcaagacccagaccgttaccgcgatc
gagcaggcccacctgatggtccacgccgaccagaagatcccggctgtgctgcgtctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggcctccgcgctggaagccaagggttacaaggctgccgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgcctggacatcgttgtc
gctaccgacgtcgctgcccgtggcctggacgtaccgcgcatcactcacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtacaccgtatcggccgtaccggccgtgctggt
cgcgatggccgtgcactgctgctggtcaccccgcgtgagcgccgcatgctgcaggtgatc
gagcgcgtaaccgggcagaaagttgccgaagcccgcctgccgaatgcccaggccgtgctg
gacgcccgcatcaagaagctgacctcgagcctggcgccgctggttgccgaagcggaagcc
acccacggcgaactgttcgaccgcctgaccgccgacctgggttgcagcgcgcgtgccctg
gctgctgccctgctgcgcaaggccaccaatggccaggcgctggacctggccgcggtagag
cgtgagcagccgctggtgccgagcttcgccccgcgtggtgagcgtaccgagcgtggtgag
cgtggcgagcgctcggagcgtggtgaccgcgagcgccgtgcgccgatgccgctggccgaa
ggccgtgtgcgttgccgtactgccctgggtgcccgtgacggcatcgctgccaagaacctg
ctgggcgcgatcctcaacgagggtggtctggctcgtgacgccatcggccgcatccaggtg
cgcgacagcttcagcctggtcgagctgccggaagatggcctggagaagctgctgtccaag
ctcaaggacacccgcgtggctggcaagcagctgaagctgcgtcgctaccgcgaggattga
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