Pseudomonas putida DLL-E4: DW66_1995
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Entry
DW66_1995 CDS
T03439
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppud
Pseudomonas putida DLL-E4
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppud03032
]
DW66_1995
03400 DNA repair and recombination proteins [BR:
ppud03400
]
DW66_1995
Enzymes [BR:
ppud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DW66_1995
DNA replication proteins [BR:
ppud03032
]
Prokaryotic type
DNA Topoisomerases
DW66_1995
DNA repair and recombination proteins [BR:
ppud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DW66_1995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AHZ76513
LinkDB
All DBs
Position
2174543..2177152
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA
PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV
RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV
YGSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT
VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPP
ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF
SNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESNEDGMRANQPTMTN
IPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVLL
GKHRCPICATAMDAYLLDEKHKLHICGNNPDCAGYEIEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPEGRPAVIRYSRKTKE
QYVQSEVDGKPTGWKAFYDGNAWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctccccaccagc
ggttcggccagcgccagcaaagagccagccgccaagcgtggcaaggccgcgggtgaggct
ccggccctgtcgccgaaggaaaaggcccgccgccagctggtggcacgcatgggcgtcgac
cccgaccacggctggaaggccaagtacgagatcctgcctggcaaggaaaaggtgatcgaa
gagctgcgccgcctggcgaaggatgccgacaccatctatctcgcaaccgacttggaccgc
gaaggggaagccattgcctggcacctgcgcgaggccatcggcggcgacgacacccgctac
aagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaagccttctcgcagccg
ggcgagctggatatcgaccgggtcaacgcgcagcaggcgcggcgtttcctcgaccgcgtg
gtcggctacatggtttcgccgctgctgtgggccaagatcgcacgtggcctgtccgccggc
cgtgtacagtcggtggcggtgaagctggtggtggagcgcgagcgtgaaatccgcgcgttc
atcccggaagagtactgggaaatccacgccgacctcggcaccgccaagaacgccaaggtg
cgtttcgaagtggcccgcgagaagggtgaggccttcaagccgctgaacgaagcccaggcc
atggccgcgctggagaagctcaaggcttccagctacagcgtggtcaagcgcgaagaccgc
ccgaccagcagcaagccttcggcaccgttcattacctccaccttgcagcaggccgccagc
aaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgcttgtacgaagcc
ggctacatcacctacatgcgtaccgactcgaccaacctgtcggccgacgccctggatatg
gcgcgcagctacatcgagcgcgagttcggcaagcagtacctgcccgaggcaccgctggtg
tacggcagcaaggaaggcgcccaggaggcgcacgaagcgattcgtccttccgacgtaaac
acccacccgagcaagctcagtggcatggagcgtgacgccgagcgcctgtatgagctgatc
tggcgccagttcctggcctgccagatgccgccggcgcaatacctgtccaccagcgtcacc
gtggctgcaggcgacttcgagttgcgtgccaagggccgtatcctcaagttcgacggttac
acccgtgtgctgccgcaacagagcaagcctggcgaagacgacgtgttgccggaaatggtc
cagggcgaagcgctgaagctgatccagatcgacccgagccagcacttcaccaagccaccg
gcgcgcttcaccgaagccagcctggtcaaggaaatggaaaagcgtggcatcggtcgcccg
tcgacctatgcggcgatcatttcgaccattcaggaccgtggctatgtgactctgcacaac
cgccgcttctattccgagaagatgggcgacatcgtcaccgagcgcctgtccgaaagcttc
tccaacctgatggactacggctttaccgccgacatggaagagaacctcgacgacgtggcc
cagggcgagcgtgactggaagaacgtgctcgacgagttctacggcgatttcagcaagaag
ctgcagactgccgagtccaacgaagacggcatgcgtgccaaccagccgaccatgaccaac
attccgtgcaaggaatgtggccggccgatgatgatccgcaccgcttccaccggcgtgttc
ctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaacctg
gtgccgggcgacgagattgccgccgacgacgagggcgaatcggaatcccgcgtgttgctg
ggcaagcaccgctgcccgatctgcgccacggcgatggatgcctacctgctggacgagaag
cacaagctgcacatctgcggtaacaacccggattgcgctggctacgagatcgaggaaggc
aactaccgcatcaagggttacgaagggccgagcctggagtgcgacaagtgtggcagcgag
atgcagttgaagactggccgcttcggcaagttcttcggttgcaccaacccggcgtgcaag
aacactcgcaaactgctcaagagcggcgaggcggcgccaccgaagatggacaaggtggac
atgccagagctcaagtgcgagaaggtcgacgatacctacgtgctgcgtgatggcgcttcg
gggctgttcctggcagccagccagttccccaagaatcgcgaaacccgtgcaccgctggtg
ctggaaatcgttccacacaaacacgagattgatccgaagtaccacttcctgtgcgatgcg
ccgcagaaagacccggaaggccgccctgcagtgatccgctacagccgcaagaccaaggag
cagtacgtgcagtccgaggttgatggcaagccgaccggctggaaggcgttctacgacggc
aatgcgtggaaggttgaagacaagcgctga
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