Pseudomonas putida DLL-E4: DW66_3107
Help
Entry
DW66_3107 CDS
T03439
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ppud
Pseudomonas putida DLL-E4
Pathway
ppud03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DW66_3107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppud03400
]
DW66_3107
DNA repair and recombination proteins [BR:
ppud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DW66_3107
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DW66_3107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
SMC_N
DnaJ_CXXCXGXG
AAA_16
AAA_29
AAA_25
RsgA_GTPase
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AHZ77616
UniProt:
A0A059USW0
LinkDB
All DBs
Position
3383557..3386073
Genome browser
AA seq
838 aa
AA seq
DB search
MPPRSPAPTGFIRVRGAREHNLKNIDVDIPRDALVVFTGVSGSGKSSLAFSTLYAEAQRR
YFESVAPYARRLIDQVGVPDVDAIEGLPPAVALQQQRGTPSARSSVGSVTTLSSSIRMLY
SRAGSYPAGQPMLHAEDFSPNTPQGACPECHGLGRVYEVSEATMVPDPSLTIRERAVAAW
PMAWQGQNLRDILVTLGYDVDTPWRDLPQQQRDWILYTEETPTVPVYAGLTPAQTRAALK
RKLEPSYQGTFSGARRYVLHTFMHSQSAQMRKRVSQYMRPSPCPQCQGKRLKREALDVTF
AGCDIGELSRLSLQALAEVFRQVAAPGYLEQHDGNLTLEKRLAAQRIANELLERIGPLLD
LGLGYLALERSTPTLSSGELQRLRLATQLNSQLFGVIYVLDEPSAGLHPADSEALFEALQ
RLKQAGNSVYVVEHDLDTMRRADWLVDVGPAAGEHGGTILYSGPPAGLARVEQSCTRAYL
FSTLAQATRTPRQARDWLKLEGISRNNLHDLSAAFPLGCFTAVTGISGSGKSSLVSQALL
ELVGAHLGHADLRSEPEEQSLEDEPEQASGGFVSAGLGSIKRLVQVDQKPIGRTPRSNLA
TYTGLFDHVRKLFAATEQAKAQGFDAGRFSFNVAKGRCENCEGEGFVSVELLFMPSVYAP
CPTCHGARYNPETLAVSWQGMNIAQVLQLTVDQALQVFAEQPAARRCLQVLQDIGLGYLR
LGQPATELSGGEAQRIKLATELQRMARGATLYVLDEPTNGLHPQDIDRLLVQLNRLVDGG
HSVVVVEHDMRVVAQSDWVIDIGPGAGDAGGQVVVSGTPQVVAGCAESRTAAFLAKAL
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgccgccacgttcacccgcccccaccggcttcattcgcgttcgtggcgcccgcgagcac
aacctgaagaacatcgatgtggatatccctcgcgacgcgctggtggtattcacgggggtg
tccggctcgggcaagtcctcgctggccttctccaccctctacgccgaagcccagcgccgc
tacttcgaatcggtggcgccctatgcccggcgcctgatcgatcaggtcggcgtgccggac
gtcgacgccatcgaaggcctgccgccggccgtggccctgcagcagcaacgcggcacgccg
agtgcacgttcctcggtgggcagcgtgactaccctgtccagttcgatccgcatgctctac
tcccgcgccggcagctacccggccgggcaaccgatgttgcatgccgaggacttctcgccc
aacaccccgcaaggtgcctgcccggagtgccatgggctggggcgggtctatgaagtgagt
gaggcgaccatggtccccgacccgtcgctgaccatccgcgagcgggccgtagcggcctgg
ccgatggcctggcaggggcagaacctgcgggacattctggtgaccctgggctatgacgtc
gataccccctggcgcgacctgccccagcagcaacgcgactggattctctacaccgaagaa
acacccacggtgccggtgtatgccggcctgaccccggcgcaaacccgcgctgcgctcaag
cgcaagctcgagccgagttaccagggcaccttcagcggtgcccggcgctacgtgctgcac
accttcatgcactcgcagagcgcgcagatgcgcaagcgtgtgtcgcagtacatgcgcccc
agcccatgcccgcagtgccagggcaagcgcctcaagcgtgaggcgctggacgtaaccttc
gccggctgcgacataggcgagctgtcgcggttgtcgttgcaggcgctggccgaggtgttc
cgtcaggttgctgccccaggctatctggagcagcacgacggcaacctgaccctggaaaaa
cgcctcgccgcgcaacgcatcgccaacgaactgctcgaacgcatcggtcccctgctcgac
ctgggcctgggctacctggccctggagcgcagcacccctaccctgtcctctggagagctg
caacgcctgcgcctggccacccagctgaactcgcaattgttcggcgtgatctacgtgctg
gacgagccgtcggccggcttgcacccggccgacagcgaagccctgttcgaagcgctgcag
cgactgaagcaggcaggcaattcggtgtatgtggtggagcacgacctggataccatgcgt
cgcgccgactggctggtggatgtggggcctgccgctggcgagcatggcggcaccattctc
tacagcgggccgcccgccggcctggcccgggtcgagcagtcatgcacccgggcctacctg
ttcagtacattggcccaggccacgcgcacaccacgccaggcccgcgactggctgaagctc
gaaggcatcagccgcaacaatctgcacgacctcagtgccgcattcccgctgggttgcttt
accgccgtcaccggtatttccggctcgggcaagtcgagcctggtcagccaggctctgctc
gagctggtgggggcgcacctgggccatgccgacctgcgcagcgagcctgaggagcagagc
ctggaagatgaaccggaacaggccagcggcgggtttgtcagcgccggccttggcagcatc
aagcgcctggtgcaggtcgaccagaaaccgatcggccgcacgcctcgttccaacctggcc
acctacaccggcctgttcgaccatgtacgcaagctgttcgctgccaccgaacaggccaag
gcacaaggcttcgatgccgggcgtttctccttcaacgttgccaaggggcgctgcgagaac
tgcgagggcgaaggcttcgtcagtgtcgagttgctgttcatgcccagcgtctacgcgccc
tgcccgacctgccatggcgctcgctacaacccggaaaccctggcggtgagctggcagggc
atgaacatcgcgcaggtgctgcaattgaccgtcgaccaggccctgcaagtgttcgccgag
cagccagcggctcgccgctgcctgcaggtgctgcaggacatcggcctgggctatttgcgc
ctggggcagccggccaccgaactgtccggcggcgaggcgcagcgcatcaagctggccacc
gagctgcagcgcatggcccgcggggcgacgctgtatgtactggacgaacctaccaacggc
ttgcatccgcaagacatcgatcggctgctggtgcagctcaaccgcctggtcgatggcggg
cacagcgtggtggtggtcgagcatgacatgcgggtggtcgcgcagagcgactgggtgatc
gacatcggccctggggccggggatgccgggggccaggtggtggtcagcggcacgccacag
gtggtggccgggtgtgctgaaagccgcactgcggcgtttctggccaaggccttgtag
DBGET
integrated database retrieval system
