Pseudomonas putida DLL-E4: DW66_3742
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Entry
DW66_3742 CDS
T03439
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppud
Pseudomonas putida DLL-E4
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppud03032
]
DW66_3742
03400 DNA repair and recombination proteins [BR:
ppud03400
]
DW66_3742
Enzymes [BR:
ppud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DW66_3742
DNA replication proteins [BR:
ppud03032
]
Prokaryotic type
DNA Topoisomerases
DW66_3742
DNA repair and recombination proteins [BR:
ppud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DW66_3742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Metal_resist
Motif
Other DBs
NCBI-ProteinID:
AHZ78248
LinkDB
All DBs
Position
4079692..4080714
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AA seq
340 aa
AA seq
DB search
MLDCPLPRTLHYVDDSQPGLTRRRWRGRFIYLDADGQRVRDSDTLARIAALAIPPAYTEV
WICADPQGHLQATGRDARGRKQYRYHAQWREIRDQHKYGRMLAFAQALPKLRAQLHDHLA
RPGLDREKVMALVISLLDHTLIRIGNQRYLRDNQSYGLTTLRNRHVEVKGSSIRFQFRGK
RGVEHNVSLNDRRLANLLKRCMELPGQALFQYLDDDGQRHSVGSSEVNQFLQQLTGADFT
AKDYRTWAGSSLALDLLRPLAWEPESEAKRQVAAIVRQVASRLGNTPAVCRRCYIHPAVL
EHYALGRLANLPKNRVRKGLDREEVALLLFLQALEEQDDH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcttgactgccccctgccgcgcaccctgcactacgtcgacgacagccagccgggcctt
acccggaggcgctggagagggcgcttcatctacctggatgccgacggccaacgagtgcgc
gacagcgatacccttgcccgcatcgctgcactggcaatccccccggcctataccgaggtg
tggatctgcgccgacccgcaaggccacctgcaagccacaggtcgcgatgcccgtggccgc
aagcaataccgctaccacgcgcagtggcgcgaaatacgcgaccagcacaagtacgggcgc
atgctggcgtttgcccaggccctgccgaaattgcgcgcacagctgcacgaccaccttgcc
cggccaggcctggaccgggaaaaggtgatggcgctggtgatcagcctgctggaccacacc
ctgatccgcatcggcaaccagcgctacctgcgtgacaaccagtcctatggactgaccacc
ctgcgcaaccgccatgtcgaggtgaagggcagcagcatccgcttccagttccgcggcaag
cgcggcgtcgagcacaacgtcagcctcaacgatcggcgcctggccaacttgctcaagcgc
tgcatggagctgcccggccaagcgttgttccagtacctggacgacgacggccagcgccat
agcgtcggctccagcgaggtcaaccagtttctgcagcagctgaccggtgccgacttcacc
gccaaggactaccgcacctgggccggtagcagcctcgccctggacctgctgaggcccttg
gcctgggagcccgagagcgaagccaagcgccaggtcgccgccatcgtccgccaggtagca
tcacgcctgggcaatacaccggcagtgtgcaggcgctgctacattcacccggctgtactt
gaacactatgccctggggcgcctggccaacttgccgaagaaccgtgtgcgcaaaggcctg
gaccgtgaagaagtagccttgctgttatttcttcaggcactcgaggaacaggatgaccat
taa
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