Pseudomonas putida DLL-E4: DW66_4907
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Entry
DW66_4907 CDS
T03439
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
ppud
Pseudomonas putida DLL-E4
Pathway
ppud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DW66_4907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppud03400
]
DW66_4907
Enzymes [BR:
ppud01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DW66_4907
DNA repair and recombination proteins [BR:
ppud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DW66_4907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AHZ79405
LinkDB
All DBs
Position
complement(5388799..5392248)
Genome browser
AA seq
1149 aa
AA seq
DB search
MIVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAEDPQDDDQGGCG
IAAAIDVQLPGSFMWQLYRSVLGRDEIPEVSLLDKAPLTWRLMRLLPALIERPHFEPLRR
FLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWAAGEHVLNTARAERKALPPGNRWQ
AELWRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPARVIVFGISSLPAQALEA
LAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQSLHQHAHP
LLAAWGKQGRDYINLLDSYDDPSSYQGVFSDGRIDLFSEGSPTTLLNQLQDDILELRPLA
ETREQWHPVDPAKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPAIDT
YAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLDLLD
VPAVRARFGIRENDLPTLHRWIEGAGIRWGLNAEQRASLGLPAGLEQNSWRFGLRRMLLG
YAVGVGEACDGIEPYDEIGGLDAALIGPLVALLDALEVASKALSEPATVSQWGERLHALL
QVFFLAEGERDEFLLMQLQDLRDSWLEVCEAVGLQDPLPLTVVREAWLSGLDQGKLSQRF
LAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQQPLDFDLMASDYRPGDRSRREDDRY
LLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLAAGWQLAGAEQGQPAEPGE
QLLHALTQEHPLQPFSSRYFQKGSPLFSFAHEWQVLHQQGQEDQQADPVLPPYHDEEALS
LTQLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPFVLDILQRYGASESLLGAALAEPD
NAEQALQAQARRLQACGVLPLAGFGELLQRELIEPLPGLLQRHRQLLQRWPQLVEGALPV
HFEHGPHRLEGWLGRVFQADDQSLLSITTVPNTISAGRNALKWHRLIAPWVTHLAACAAG
YPYNSALVASDLTLLLEPLPQAQAAQLLGDLLVARQAAMNAPLPVAAKTAFAWLAQDDSD
KALAAAARAYEGDERTSFGERSESIALARQFRDFAALTADETFEGWCEALYRPLFNAPWQ
TLGNPEKGA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtccacggcaaccgcctcgacgacctgcgcagcttggtggtgagctggatgcgt
cgctatcccttggcacctctggaaaacgaaatcgccttggtgcaaagcaatggcatcgcc
caatggctcaagctggctcttgccgaagaccctcaggacgatgaccagggcggctgtggc
atcgccgccgccatcgatgtgcaactgccaggcagcttcatgtggcagctttaccgcagc
gtgctgggccgtgacgaaattcccgaagtctccctgctcgacaaggcaccgctgacctgg
cgtctgatgcgtctgctcccggctttgatcgaacgtcctcacttcgaaccgctgcgacgc
ttcctcaccgacgacagcgacctgcgcaagcgctatcagctcgccgagcgcctggccgac
ctgttcgaccagtatcaggtctaccgcgccgactggctcaaggattgggccgctggcgag
cacgtcctcaacaccgcccgcgctgaacgcaaggcgctgcccccgggcaaccgctggcag
gccgagttgtggcgtgcattgctggaggatgttggtgagcagggcatggcgcagagccgt
gccggcgtacatcaacgcttcatcgaacggatcaatagcctggagcaggcacctgccggt
ctgccggcccgggtgatcgtattcggtatctcatcgctgccagcccaggccctcgaggca
ctggccggcctggcacgcttcagccaggtgctactgtgcgtgcacaacccctgccgccac
cactgggccgatatcgttgccgacaaggacctgctgcgccaccagtacaagcgccagcag
cgcaagcagggcatgcccttgcaactggacgaccagtcgctgcaccagcatgcccaccct
ttgctggccgcctggggcaaacaaggccgcgattacatcaacctgctcgacagctacgat
gaccccagcagttaccagggcgtgttcagcgacggtcgcatcgacctattcagtgagggc
tcgcccaccacgctgctcaaccagttgcaggacgacatccttgaactgcgtccgctcgcc
gaaactcgtgagcagtggcatccagtcgacccagcgaaggaccgctcgatccgcttccac
atcgcccatagcccgcaacgcgaagtggagatccttcacgatcagttactggcccggttc
agcgcagacccaaccctgcgcccacgtgacgtgatcgtcatgctgccggccatcgatacc
tacgcgccgcatattcgcgccgtattcggccagttgcagcgcaacgatccgcgctacatc
ccgttcaccctgaccgaccagggccaacgtggccgcgaacccttgctgattgccctcgaa
cacctgctcaagctgccggacagccgcttcgcggtcagcgaagtgctcgacctgctggat
gtgccggcagtccgcgcccgtttcggcatacgcgaaaacgacctgcccacgctgcaccgc
tggatcgagggggccggcatccgctggggcctcaatgccgagcagcgggccagcctgggc
ttgcccgctgggctggaacagaacagctggcggttcggcctgcggcgcatgctgctgggt
tatgccgtcggcgtgggtgaggcctgtgacggcatcgaaccctacgatgaaatcggtggc
ctggatgcggcgctgatcggcccgctggtcgccttgctcgacgccctcgaagtagccagc
aaggccttgtccgagcctgccactgtcagccagtggggggaacgcctgcatgccttgctg
caagtgtttttcctggccgagggcgagcgcgacgagttcctgctgatgcagttgcaggat
ttgcgtgatagctggcttgaggtgtgcgaggccgtcggcctgcaagacccattgccgctg
accgtggtgcgcgaagcctggctgtcgggcctcgaccagggcaagttgtcccagcgcttc
ctcgccggctcggtgaacttctgtaccctcatgccgatgcgcgccatcccgttccgggtg
gtctgcctgctgggcatgaacgatggcgattacccccgcgctcagcagccgctggacttc
gacctgatggccagcgactaccgccccggtgaccgctcgcgccgcgaggatgaccgctac
ctgctgctcgaagcattgttgtcggcccgcgaccagctgtatgtcagctgggtcgggcgc
agcattcgcgacaacagcgaacgcccggcctcggtgctcatcggccagttgcgcgatcac
cttgcagccggctggcagctggcaggcgcggagcaggggcagccggcagaaccgggcgag
caactgctgcacgcactgacccaggagcacccgctgcaaccgttcagttcacgctacttc
cagaagggcagcccgctgttcagctttgcccacgaatggcaggtgttgcaccagcagggc
caggaggaccagcaggctgaccccgtcctgccgccataccatgacgaggaggccttgagc
ctgacccagctgaatgacttcctgcgccacccggtgcggcatttcttcagccagcgtctg
aaggtgtacttcgaagcgctggaagcaccgaccccggacgaggaacccttcgtcctcgat
atcctgcaacgatacggcgccagtgaaagcctgttgggtgcagcgctggccgagccggac
aatgccgaacaggccctgcaggcacaagcacggcgcttgcaggcctgtggcgtgctgcca
ctggccggcttcggcgaactgctgcagcgcgagctgatcgagccccttccaggcctgctg
caacgccaccgccagctattgcaacgctggccgcagctggtcgagggggcattgccagtg
catttcgagcacggcccgcaccgcctcgaagggtggcttgggcgggtattccaggcagat
gaccagagcctgctcagcatcaccaccgtacccaacactatcagtgccgggcgtaacgcc
ctcaagtggcaccgactgatcgcgccctgggtcacgcacctggcggcctgcgcggcgggc
tacccgtataacagcgcgctggtggccagcgacttgaccctactgcttgagccactgccg
caagcgcaggcggcgcaattgctgggcgacctgctggtagcccgtcaggcggcgatgaat
gcgccgttgccggtcgcggccaagaccgcgttcgcctggctggcccaggacgatagcgac
aaagccctggctgctgccgcccgcgcctacgaaggcgatgagcgcaccagcttcggcgag
cgcagtgaaagcattgccctggcccggcagttccgcgactttgccgcactcaccgctgat
gaaaccttcgaaggctggtgcgaagccttgtaccgcccattgttcaacgccccgtggcag
accctgggcaacccggagaaaggcgcatga
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