Pseudomonas putida DLL-E4: DW66_4946
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Entry
DW66_4946 CDS
T03439
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppud
Pseudomonas putida DLL-E4
Pathway
ppud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DW66_4946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppud03019
]
DW66_4946
03016 Transfer RNA biogenesis [BR:
ppud03016
]
DW66_4946
Enzymes [BR:
ppud01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DW66_4946
Messenger RNA biogenesis [BR:
ppud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DW66_4946
Transfer RNA biogenesis [BR:
ppud03016
]
Prokaryotic type
tRNA degradation factors
DW66_4946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AHZ79443
UniProt:
A0A059V5J3
LinkDB
All DBs
Position
complement(5437140..5439245)
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AA seq
701 aa
AA seq
DB search
MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTESAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAGKPTWDWQPAPAN
VELMNLVRAEFGEAVSQAYTITQKADRYNRLGQLRDEAVARLSNEETGPSAGAIKEIFGE
LEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVQAMLPSDS
EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
IIAQSRSELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagacattccagttcggtcagtcgaccgttactctcgaaacgggc
cgtattgcccgtcaggcaaccggcgccgtgctggttaccgtcgacaacgacgtcaccgtg
ctggtgaccgtggtcggtgccaaacaggccgatccaggcaagggcttcttcccgctgtcg
gtccactaccaggaaaagacctacgccgccggcaagatcccgggtggcttcttcaagcgt
gaaggccgtccttccgagaaagagaccctgacctcgcgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggttgtctgcaccgtggtttccacc
agcaagaagaccgacccggacatcgctgcgatgatcggtacctcggccgccctggccatc
tccggcattcctttcgaaggcccgatcggcgccgctcgcgttgccttccacgaaagcacc
ggctacctgctgaacccgacctacgagcaactggctgcctcgagcctggacatggtcgtt
gccggtaccgaatcggctgtactgatggttgagtcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtgctgttcgcccacgacgaattccaggccgtgatccaggccgtc
aaggaactggctgccgaagccggcaagccgacctgggactggcagccagccccggccaac
gtcgagctgatgaacctggtacgcgccgagttcggcgaagccgtttcgcaggcctacacc
atcacccagaaggctgaccgctacaatcgcctgggccagctgcgcgacgaggctgttgcc
cgtctgagcaacgaagagaccggcccgtccgccggcgccatcaaggaaatcttcggcgag
ctggaataccgcaccgtccgtgagaacatcgtcaacggcaaaccgcgtatcgacggccgt
gacacccgcaccgtgcgcccgctgaacatcgaagtcggcgtcttgccaaagactcacggt
tcggcgctgttcacccgtggcgaaacccaggccctggtcgttgcgaccctgggtactgcc
cgtgacgcccagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttcccgccattctcggtgggtgagtgcggtcgcatgggcggcgctggccgtcgt
gaaatcggccacggccgcctggcccgtcgtggcgtgcaggccatgctgccgagcgacagc
gagttcccgtacaccatccgcgtggtatcggaaatcaccgaatccaatggttccagctcc
atggcttcggtctgtggtgcttccctggccctgatggacgctggtgtaccgatgaaggca
ccggttgccggtatcgccatgggcctggtcaaggaaggtgacaagttcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aagggtgttaccgcgctgcagatggacatcaagatcaacggtatcaccgaagagatcatg
gagatcgccctgggccaggccctggaagcgcgcctgaatatcctcggccagatgaaccag
atcatcgcccagtcgcgtagcgagctgtcggccaacgccccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgtcatcggtaaaggcggcgccaccattcgcgccatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgatggctcgatcaagatcttcggc
gaaaccaaggaagcggcagatgctgccaagcaacgcatcctgggcattaccgccgaagcc
gagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggtgcgttcgta
aacatcctgcctggcaaggacggcctggtgcacatctccatgctgagcgatgctcgcgtc
gagaaagtcaccgacatcctgaaagaaggccaggaagtcgaagtactggtactggacgtg
gataaccgcggccgtatcaagctgtcgatcaaggacgttgccgcggcgaaggcctcgggc
gtctaa
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