Pungitius pungitius (ninespine stickleback): 119193907
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Entry
119193907 CDS
T07626
Name
(RefSeq) RNA-binding protein 39-like
KO
K13091
RNA-binding protein 23/39
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppug03041
]
119193907
Spliceosome [BR:
ppug03041
]
Common components
Common spliceosomal components
General mRNP proteins
119193907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
RRM_5
RRM_8
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
119193907
NCBI-ProteinID:
XP_037303715
LinkDB
All DBs
Position
8:complement(4022268..4026517)
Genome browser
AA seq
492 aa
AA seq
DB search
MADDLDIEAMLDAPYTKEDSKNPSPNGQEERPKRKKRSREKKRSHEKKRSRSRERKRSRS
REKRRSRSRERRSSRERGGRYRDHHQQRRRSKTKSPVRKEKSPIRPPMDNLTPEERDART
VFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRKSKGIAYIEFVETNSVPLAIGLT
GQRLLGVPIIVQASQAEKNRAAAAAAAANNLQKGSSGPMRLYVGSLHFNITEEMLRGIFE
PFGRIESIQLMMDSDTRQSKGYGFITFADAECAKKALDQLNGFELAGRPMKVGNVTERTD
AFASFLDSDELERSGIDLGTTGRLQLMARLAEGTGLQMPPAAQQALQMSGVIAMGAMAAV
SAAMNPNINMHSSAQSVPSHPLATHCFQLSNMFHPSCEDPPGWELDIQHDVIEECNKHGG
VVHIYIDKNSAEGNVYVKCPSIPAATAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSA
TNSVQLALPQRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgacctggacatcgaggcgatgctggatgctccgtacacaaaggaggactcc
aagaacccaagccccaatggacaagaggaacgccccaagaggaagaagcgcagccgggag
aagaagcgcagccatgagaagaagcgcagccggagccgcgagcgcaaacgcagccgcagc
agagagaagaggagaagccgtagcagagagcgtcgcagcagcagggagaggggggggcgc
tacagggaccaccaccagcaacgcaggcgttcaaagactaagagtcccgtcaggaaggag
aagagtccaatcaggccacccatggataacctgactccagaggagcgtgatgcgcgcacg
gtcttctgcatgcagctagccgccaggataagaccccgggacctggaggatttcttttct
gctgtggggaaggttcgggatgtgaggatgatttcggacaggaactcccgcaagtccaag
ggcatcgcctacatagagtttgtggagaccaactccgtcccactggccattgggctgact
gggcaaaggctgctgggagttcccatcattgttcaggcctcgcaggcggaaaagaaccga
gcagccgcagcagcggccgcagccaacaacctgcagaagggatcatcgggaccgatgagg
ctgtacgtcggctctctgcacttcaacatcacagaggagatgctgagaggaatttttgag
ccatttggacggattgagagcatccagctgatgatggacagtgacactcgacagtctaaa
ggctacggcttcatcacttttgcagatgcggagtgcgccaagaaagccctggatcagctg
aacggctttgagctggctggtcgacccatgaaggtgggtaatgtgacagagcggaccgac
gcctttgcctccttcctggacagcgacgagctggagcgcagcggcattgacctcgggacc
accggacgcctgcagctgatggcccggctcgctgagggtactggtctacagatgcctccc
gccgctcagcaggctctgcagatgagcggagtgatcgctatgggagccatggctgccgtg
tcagctgccatgaatccgaacatcaacatgcactcttctgctcagagtgttccctctcac
ccgctcgccactcactgcttccagctgtccaacatgttccaccccagctgtgaggatcct
cctggttgggagttggatatccagcacgatgtcatcgaggagtgcaacaagcacggggga
gttgttcacatctacatcgacaagaactctgcggagggaaacgtttacgtgaagtgtcct
tcgatccctgctgctacggctgcagttaacgctctacacggacggtattttgctggtaag
atgatcacagcagcttacgtcccgttgcccacctaccataacctgttcccggactctgcc
accaactcagtgcagctggcccttccccagcgacggtga
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