Pungitius pungitius (ninespine stickleback): 119194043
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Entry
119194043 CDS
T07626
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ppug04121
]
119194043 (pdzrn3b)
Enzymes [BR:
ppug01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119194043 (pdzrn3b)
Ubiquitin system [BR:
ppug04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
119194043 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
Sina_ZnF
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
zf-TRAF
zf-rbx1
TRAF3_RING
zf-RING_6
U-box
IBR_1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
119194043
NCBI-ProteinID:
XP_037303987
LinkDB
All DBs
Position
8:12538444..12609128
Genome browser
AA seq
1039 aa
AA seq
DB search
MGFELDRFRGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRVS
AKELNHVLPLKNLILKLDIKCDNHARGCDAVVKLQHLAEHAEACEYAPVKCRNAGCDETL
SLGDVDAHMRETCDCRPAGACERGCGLTLTHREQRSGSHCCVRALKAHNGALHCRLIGLD
REFKKQTIKANKRERSLLAQLSAVHSELQVTALKYQKKFTEYSERIDCLTQTVAFSCKEG
ETKSVTVVLLREGGSLGFNIVGGRPCADDGDSVSNEGIFVSKVIDDGPADKEDGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIVVQVLRRAPHLKALGPAGDAQVSDTSTQTDIT
LQHIMALTKLSPSSPPMTELEEYLLPEEHPPHAYFDSNDFLEVMQQDIEREELEYEEVDL
YRANIQEKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNRE
DAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNVFLDDLHMDMLEQQHHQAMQFTASM
LQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDHTTASNTLGS
CRKLAYSQDTLGSGDLPLCGDYADADFLGIPADECERFRELLELKCQMRSSGAQGLYHQG
GAGAGGQDQEGVDKELEMLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHDSGFRNY
NTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGAEEPRPA
GASGSAGGALKPLLPPVQEAGVPGRSRCCAKDPDGAAPAESQERKPDESVKSGRGFAQPR
SPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPGGPEPKMEWKVKIRSD
GTRYITKRPVRDKLLRERALRIHAERSGGMTTDDDAISELKMGRYWSKEERKQHAVRSKE
QRQRREFMKQSRADCLKEQSGPEDRKEPSIIELSHKKMMKKRSKKIFDNWMTIQELLTHG
TKSPDGTRVYNAILSVTTV
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgattcaggggcaccgtggacccggatttcaaatgtaacctg
tgcaataaggtcctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaaatgccagcgggtctcc
gccaaagagctgaaccacgtcctgcccctgaagaacctcatcctgaagctggacatcaaa
tgtgacaaccacgcgcggggctgcgacgccgtggtgaagctgcagcatctggccgagcac
gccgaggcgtgcgagtacgcgccggtcaaatgcaggaatgccggatgcgacgagaccctc
agcctcggggacgtggacgcgcacatgcgggagacgtgcgactgccgacccgcgggggcg
tgcgagcgcggctgcggcttgacgctcacccaccgggagcagcgctccggcagccactgc
tgcgtgcgcgccctgaaggcgcacaacggcgcgctgcactgcagactcatcggcctggat
cgagagttcaagaagcagaccatcaaagccaacaagagggagaggtcgctgctggcgcag
ctttccgccgtgcacagcgagctgcaggtgacagctctgaaataccagaagaagttcacc
gagtacagcgagaggatcgactgcctcacgcagacggtggctttttcctgcaaggaaggc
gagactaaaagcgtgacggttgtccttctccgtgagggcggatctctggggtttaacatc
gtaggaggaaggccatgcgcggacgacggtgacagcgtttcgaacgaggggatctttgta
tccaaggtcatcgatgacggtccggcggacaaggaagacggtcttcagatccacgaccga
ataatagaggtcaatggcaaggacctctccaaggccacccacgaccaggctgtggaggcc
ttccgcaccgccaaggagcccatcgtggtgcaggttctgcggcgagccccgcacctcaaa
gcgctcggcccggctggtgacgcccaggtctcggacactagcacccagaccgacatcacg
ctccagcacatcatggccctcacaaaactctccccctcttcaccgcccatgacggagctg
gaggagtatctgctcccagaggagcatccgccacatgcatactttgactccaatgacttc
ctggaggtcatgcagcaggacatagagcgcgaggagctggaatatgaggaagtggatcta
taccgggccaacatccaagagaagctcggcctgaccatctgctacaggactgatgacgag
gatgaggctgggatctacatcagtgagattgacccaaacagcatcgctgcaaaggatggc
cgaatcagagagggggacaaaatcattcagatcaatggtgttgagatccagaaccgggag
gatgctgtagcgctgctgaccagtgaggggaaccagaatatctctctgctggtggccaga
ccggagatccagctggacgagggctggatggatgatgacaggaacgtcttcctggatgac
ctccacatggacatgctggagcagcagcatcatcaggccatgcagttcaccgccagcatg
ctgcagcagaagaagcacgaggaggacgggggcaccacggacacggccacgctgctgtcc
aaccaccacgagaaggacagcggcgtcggccgcacggacgagagcacgcggaacgacgag
agctcggagcaggagaacctcggcgacgatcacaccaccgcctccaacacgctgggcagc
tgcaggaagctcgcctacagccaggacaccctgggcagcggcgacctgcccctctgcggc
gactacgccgacgccgacttcctgggcatcccggctgacgagtgcgagcgcttccgggag
ctgctggagctcaagtgccagatgaggagcagcggggcccagggcctttaccaccagggc
ggcgccggggcgggaggtcaggaccaagagggcgtcgacaaagagctggagatgctcaac
gaggagctgcgcaccatcgagctggagtgcttgaacatcgtgcgcgcccacaagatgcag
cagctgagggagcagtgccgcgagtcctggatgctccacgacagcggcttccgcaactac
aacaccagcatcgacgcgcggcgccacgagctctcggacatcaccgagctgcccgagaaa
tcggacaaggacagctccagcgcgtacaacaccggcgagagctgccgcagcacgccgctc
accttggagctgtccccggacaactcgctgcgccggggagccgaggagccgcgtccggcc
ggagcttcgggctccgcgggcggggccctcaagcccctcctgccccccgtccaagaggcc
ggcgtccccggccgcagcaggtgctgcgccaaggacccggacggagcggcgccggccgag
agccaggagcgcaagccggacgagtccgtcaagtcggggcgcggcttcgcccagccgcgc
tcgccgtacaagcacgcccacatccccgcccacgcgcagcactaccagagctacatgcag
ctcatccagcagaagtcggccgtggagtacgcccagagccagatgagcctggtcagcatg
tgccgggaccccggcggcccggagcccaagatggagtggaaggtgaagatccgcagcgac
ggcacgcgctacatcaccaagcggcccgtgcgggacaagctgctgagggagcgcgccctg
cgcatccacgccgagcgcagcggcggcatgacgacggacgacgacgccatcagcgagctg
aagatgggccgctactggagcaaggaggagaggaagcagcacgcggtgcgctccaaggag
cagaggcagcgccgcgagttcatgaagcagagccgggccgactgcctgaaggagcagtcg
ggcccggaggacaggaaggagcccagcatcatcgaactcagccacaagaagatgatgaag
aagaggagtaagaaaatatttgacaactggatgaccatccaggaactgctgacccacggc
accaagtcaccagacggcaccagggtttacaacgccatcctgtctgtgaccacggtgtaa
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integrated database retrieval system
