Pungitius pungitius (ninespine stickleback): 119194106
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Entry
119194106 CDS
T07626
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ppug04812
]
119194106 (katnb1)
Cytoskeleton proteins [BR:
ppug04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
119194106 (katnb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Katanin_con80
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
EIF3I
WDR55
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_RIG_1st
Beta-prop_LRRK2
Beta-prop_WDR35_TULP_N
PROPPIN
RMC1_N
Beta-prop_IP5PC_F
Tricorn_2nd
Ge1_WD40
Beta-prop_DCAF12
VPS8_N
Beta-prop_ACSF4
Beta-prop_NUP159_NUP214
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
119194106
NCBI-ProteinID:
XP_062417954
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Position
4:25746089..25755630
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AA seq
720 aa
AA seq
DB search
MKICADFHQLTCGTSKGTCERTSVKTSMAVANSTKISWRLQEFEAHSSSVSCLALGRNSG
RLLATGGGDCRVNIWAVSKANCIMSLTGHKNPVECVQFNMSEEQVVAGSQSGSIRVWDLE
AAKILRTLMGHKSSITSLGFHPFGDFLASSSMDTNIKLWDVRRKGYVFRYKGHTEAVRSL
AFSPDGKWLASASDDSTVKLWDLTQGKIITEFKSHTAPVNIIQFHPNEYLLASGSSDRTI
KLWDLEKFTMIGSLEGDTTPVRSVFFSSDGSCLYSGATDSLRIFGWEPDRCFDVVPVGWG
KVSDLAVCNQQLIGVSHQLSSVSSYVVDLKRVKKNAGSVIRGIIQDNQPLAEPNDVKGSA
LRRSYERPTTTCSSQRVKRRSDTERRSPEGERRSPSEDEADEKLSSAEIHNAEDFKEIFQ
PKNAISRTPPKMSEPFPAPPEDETILAIGRQLKDMISAFPEKQQAPPLASSTPVQRVEPT
VVSLAKRPTPSAVVPASPPPQPPVSTFRSKPKIILSCRNEPIGLNVADFLPSSPNNRGAA
LSDDEALSQLKKGHDTMCVMLRSRHKNLETVRSVWVREDIKVRQSALDAAVSMNDLSIVV
DILNIINLQPTLWRLDLCTTILPQIDQLLHSKYESYIQTGCTSLKLIMKHFWTLIFETLK
ATPSVGVDITREERHQKCRAICKQLKNLSNLVKNKALQVGRHGSAFRELQLLMAPLDDSL
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaagatctgtgcagactttcatcagttaacctgtgggaccagtaaggggacctgtgag
aggaccagtgtgaagaccagtatggctgtggccaacagcaccaagatctcatggaggctg
caggagtttgaggctcattccagctctgtttcctgtctggctttggggaggaactccggc
cgcctgctggccaccggggggggggactgcagggtgaacatctgggccgtcagcaaagcc
aactgcattatgagtttgactggccacaagaacccagtggagtgtgtccagttcaacatg
tcagaggagcaggtggtggctggttctcagtctggatccatacgagtgtgggacctggag
gcagcaaagattttaaggactctgatgggacacaaatccagcatcaccagtctgggcttc
catccttttggagacttcctggcctccagctccatggacacaaacatcaagctgtgggac
gtccggaggaaaggatatgtgttcaggtacaagggtcacactgaggcagtgaggagtctg
gccttcagtcccgatggaaagtggttggcttcagccagtgacgactctacggtcaagctg
tgggacctaactcaggggaagataatcacagagtttaaatctcacactgcaccagtcaac
atcatccagtttcaccccaacgagtacctgctggcctcaggcagctccgacaggaccatc
aagctctgggatttggaaaagttcaccatgattggctcgttggaaggagacacaactcca
gtaaggtctgtgttcttcagctcggacggctcctgcctatacagcggggcgacagattcc
ctgaggatcttcggctgggagcctgaccgctgcttcgacgtggtgccggtgggctggggc
aaggtctctgacctggcggtctgcaaccagcagctgatcggcgtgtctcaccagctctcc
agcgtgtcctcctatgtggtggatctcaagagggtgaagaagaatgcggggtctgtgatc
cggggaatcatccaggataaccagccgctggcagagccaaatgatgttaaaggatctgca
ctacgcaggagttatgagagacccaccactacctgcagctcacagagggtaaagcggagg
tcagacactgagaggcggagccccgaaggtgagaggaggagccccagtgaggacgaagca
gacgagaagctatcgtcggctgaaatccacaacgcagaagacttcaaagagatcttccag
ccaaagaacgccatctctcgaactcctcccaagatgtcggaacctttccctgctcctcca
gaggatgagaccatattagccatcggccggcagctaaaggacatgatatctgcttttcct
gaaaagcagcaggctccgcccctcgcctcctccacacctgtccagagggtggagcctaca
gttgtctcccttgcgaagcgtcccaccccgtcagcggtggtacccgcctcccccccccct
cagccccccgtcagtacattcaggtctaaacctaaaatcatcctgagctgccggaacgaa
cccatcggactgaacgtggccgacttcctgccgtcgtcccctaacaacagaggtgcagct
ctaagtgatgacgaggctctgtcccagctgaagaagggtcatgacaccatgtgtgtgatg
ctgcgcagccgacacaagaacctggagacagtccggtctgtgtgggtccgagaggacatc
aaggtgagacagagcgctctggatgctgctgtctcaatgaacgatctgtccattgttgtg
gacatcctgaacatcatcaacctccagccgacactatggagactggacctgtgcacaacc
atcctccctcagatcgaccagctgctccacagtaaatatgagagctacattcagaccggc
tgtacgtccctcaagctcatcatgaaacatttctggactctgatctttgagactctgaag
gcgactccgtccgtcggtgtagacatcacacgagaggagcgacatcagaagtgcagagca
atctgcaagcagctgaagaacctgagtaacctggtgaagaacaaggcgctgcaggtcggt
cgtcatggcagcgccttcagagagctgcagctgctcatggcgccgctcgacgactcgctc
tga
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