Pungitius pungitius (ninespine stickleback): 119194216
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Entry
119194216 CDS
T07626
Symbol
rbl1
Name
(RefSeq) retinoblastoma-like protein 1 isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug04110
Cell cycle
ppug04218
Cellular senescence
ppug04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119194216 (rbl1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119194216 (rbl1)
04218 Cellular senescence
119194216 (rbl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppug03000
]
119194216 (rbl1)
Transcription factors [BR:
ppug03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
119194216 (rbl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
SLH
Rb_C
Motif
Other DBs
NCBI-GeneID:
119194216
NCBI-ProteinID:
XP_037304283
LinkDB
All DBs
Position
8:270186..279082
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AA seq
1053 aa
AA seq
DB search
MRGEESSDSECGRMEESSVRRSLETLCQELNMDESTASETMDSFSGIWNTYTLEGEVVHW
LACSLYAACRKGSTPTVGKGLMEGNCVSLTRILRTAKLSLIQFFSKMRKWADMSNLPQDF
RLRMERLERNFEVSTVIFRKFEPIFMDMFQDPQGGGRPRQPRSRKHRRLPCHISDVFKFC
WTLFVYTKGNFRMIGDDLVNSYHLLLCCLDLVFGNALLCNNRKELINPTFRGLPALHPAG
GLQSDEPPPCVLERLCELHDGLVVEAKGIKQHYFKPYIQKLYHREILKGNEDHLTELLDP
QNFIDNNKAINREYEEYVLTVGDFDERVFLGADADEEIGTPRKVLQEPSQTNSQSPPHQH
VEKSGSLAPPTPLTGRGYLKEKDLLVTPVSSATQSVSRLQSMVSGLRASPSEQLLQMFRS
CSRNPTESILGRVKTLGQTFKHHYTKDSEDMPGSHIDFAENRLKLAEILYYKILENVLLQ
ETKRLHGKDMSVLLEQDMFHCSLVACCLEVVLFSYSSQRTFPWIIDIFKLTPFYFFKVIE
VFIRSEEGLSRDMVKHLNLIEEQVLESRAWRADSALWSALEAAGSKVPTVEEVNFPSSLD
TGSGPGGGVPSHLPLVALSPIIHPRIREFRSGLGSARKDVPPSPLSVHDRYSSPAAGSAK
RRLFGDDPPSRPPCVTPGSHVTSPAKRLTFGCGGTLRIGAQSAQTTVLSIPLQGGNNERT
ITLIPVQPCDSSGTITAQFLLTASPSRAPGPVTSDPQVGNARPRRTGSLALFFRKVYHLA
SVRLRDLCVRMDVSSELRGKIWTCFENSLVHSTGLMRDRHLDQLLLCCVYIVSKITKETH
SFHDIMKCYRCQPQASSHVYRSVLLRHKEQATDENMEVDPVSGGESAEKIDEGAGPARAA
DQSEERGDLIQFYNSVFVLKMKSFALRYATQDHRADAPPLSPFPSVRAQPLSPRRVSQRH
SLYVSPHKSSACCLTPNSFTYRINSSPAKELSDINRMIRQGSSSRKRAFTMEGDVMMSSA
CDSPSKKACPESGSSADVLLKRLQDVVSERQSH
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcgaagagtcgtccgattccgagtgcgggaggatggaggagagctcggtgcgg
aggagcctggagaccttgtgccaggagctcaacatggacgagagcaccgcctcggagacc
atggacagcttctctggcatctggaacacctacaccctagagggcgaggtggtccactgg
ctggcctgctctctgtacgccgcctgcaggaagggctccacgcccactgtgggcaaaggc
ctcatggagggcaactgcgtctcgctcaccaggatcctccggaccgccaagctcagtctg
atccagttcttctctaagatgaggaagtgggccgacatgtcgaacctccctcaggacttc
aggctccggatggagcgcctcgagcgcaacttcgaggtctccactgtcatcttccgcaag
ttcgagcccatcttcatggacatgttccaggacccgcaggggggggggcgtccccggcaa
ccgcgcagcaggaagcacaggcgtctgccatgtcacatcagcgacgtgttcaagttctgc
tggactctgtttgtttacaccaaaggtaacttccggatgatcggggatgacctggtgaac
tcgtaccacctgctgctctgctgcctggatctggtgtttggcaacgcgctgctctgtaac
aacaggaaggagctcatcaaccccacctttagaggtctgcctgcgctccaccctgctggc
ggcctgcagtcagacgaacctcctccgtgtgtgttggagcgtctctgtgagcttcatgac
ggcctggtggtggaggccaagggcatcaaacagcactacttcaaaccctacatccagaag
ctctaccacagagagatcctgaagggcaatgaggaccatttgacagaactgttggatcct
cagaactttattgataacaataaggccataaacagggagtacgaggagtacgtgttgacc
gtgggagactttgacgagcgagtgtttctgggagctgacgccgacgaggagatcggaacc
ccgagaaaagtcctccaggagccgagtcagacgaactctcagagtccaccacatcaacac
gtggagaagtcaggttctcttgccccacccactcctctgactgggcggggctatctgaaa
gagaaggacctgctcgtcacccccgtctcctcggcaacgcagagcgtcagccggcttcag
agcatggtgagcggtctgagggcgtctcccagcgagcagctgctgcagatgttcaggtcg
tgctccaggaaccccacagagtccatactgggccgagtgaagacactgggacaaaccttc
aaacaccattacaccaaggactcagaggacatgccgggatctcacatagacttcgcagag
aaccgtctcaagttggctgagatcctttactacaaaatcctggagaacgtcctgctgcag
gagaccaagcgcctccacggcaaagacatgagtgtgctgttggagcaggacatgttccac
tgctccctggtggcttgttgtctggaggtggtgttgttctcgtacagctcccagaggacc
ttcccctggatcatcgacatcttcaagctgaccccattctacttcttcaaggtgattgag
gtgttcatccgctcagaagagggcctctctagagacatggtgaagcatctgaacctcatt
gaggagcaggttctggagagcagagcgtggcgggctgactctgccctgtggagcgccttg
gaggctgcgggtagcaaggtccccacggtggaggaggtgaacttcccctccagcctggac
actggttccggccctggcgggggggtgccgtctcacctgcctctggtcgccctctccccc
atcatccacccccgcatcagggagttcagatccggcctgggcagcgcccgtaaagacgtt
cctccgtctccgctgtcggtccatgaccggtacagctccccggcggctggcagcgccaag
cggcggctgttcggggacgacccgccgtctcgacccccgtgtgtgacccccgggagccac
gtgacgtcgcctgccaagaggttgacgttcggctgcggcggcaccttgaggatcggagct
cagagcgctcagaccaccgtgctcagcatcccgctccaaggtgggaataacgagcgcacc
atcacgcttatcccggtacagccgtgtgactcctccggtacgatcaccgctcagttcctc
ctcaccgcctcgccgagcagagcccccggcccggtgacctctgacccccaagtgggaaac
gcccggccgcggcgcaccgggtcgctcgctctgttcttcaggaaggtgtaccacctggcc
agcgtgcggctccgggacctgtgcgtgaggatggacgtctcctccgagctgcgggggaag
atctggacctgtttcgagaactcgctggtccacagcaccggtctgatgagggaccggcac
ctggaccagctgctgctgtgctgtgtctacatcgtatctaagatcaccaaagagactcac
agcttccacgacatcatgaagtgttaccgatgccaaccacaggccagcagccacgtgtac
cgcagtgtgttgctgcgccacaaggagcaggcgactgatgagaacatggaggtggaccct
gtctcaggtggagaatctgcagagaaaatcgatgagggggcgggaccagcgagagcagcc
gaccaatcggaggagcgcggagacctcattcagttctacaacagcgtgttcgtgctgaag
atgaagagcttcgctctgcgctacgccacccaggaccaccgggccgacgccccccccctc
tctcccttcccctcggtccgggctcagcctctgtccccccgccgggtctctcagagacac
tcgctgtacgtctctcctcacaagtcctccgcctgctgcctgacgcccaactccttcacc
taccgcatcaacagcagcccagccaaggagttatccgacatcaaccggatgatccgacag
ggcagctccagcaggaagcgcgccttcactatggagggggacgtgatgatgtcatcagcc
tgcgactctcccagcaagaaggcgtgtccagagagcggcagcagcgccgacgtgcttctg
aagcgtctccaggacgtggtgtcggagcgacagagccactga
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