Pungitius pungitius (ninespine stickleback): 119194620
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Entry
119194620 CDS
T07626
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X2
KO
K14416
elongation factor 1 alpha-like protein
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119194620 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppug03019
]
119194620 (hbs1l)
Messenger RNA biogenesis [BR:
ppug03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119194620 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
119194620
NCBI-ProteinID:
XP_037304715
LinkDB
All DBs
Position
20:complement(7974048..7992476)
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AA seq
686 aa
AA seq
DB search
MSRHRNVRGYNYDEDFDDDDIYGQSVDDDYCISPATANQFIYSRQERQAPKGETLEEEQD
EEDVPMSPTVIPNLDPLDQAKLFSCLDHMRTVLGDAVSESVLTQAAIRCGFDPQKALDAI
LSEDAKTALLTTSAGEETAPVARVNPEKAPLPQRTKQEKAKSRDASDNKLDSEVVPKVAR
MTVSGKKQTMGFNVPSTGENGVVAAAATLPSEATPKRPETPSRVSKGDEPSTVPTPGRSA
GKARQSINIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGHVNKRTMHKYEQE
SKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDAPGHKDFIPNMITG
AAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVSWQQERF
QDITSKLGHFLKQAGFKDSDVFYIPTSGLSGENLVTRSSVTQLTSWYSGLSLLEQIDAFK
APRRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERTLAMPPNETCTVKGITLHD
EALDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRVCTRFRARILLFNIEVPITQGF
PVLLHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGMNAIVEIQTQRPVALELYKD
YKELGRFMLRYVGSTIAAGVVTEIKQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcaccgaaatgtccgaggttacaactacgacgaagactttgacgatgatgac
atatatggacagtctgtggatgatgactactgtatatcaccagcaacagcaaatcagttc
atctactcacgtcaagagaggcaagcaccaaagggggagactttagaagaggaacaagat
gaagaggacgtacctatgtcacctactgtcatccccaaccttgaccctcttgaccaagcc
aagctgttttcctgtctggatcatatgcgaactgtgctgggagatgcagtgtcagagtcc
gtcctgacccaggcagccataagatgtggatttgacccgcaaaaggcactggatgccatc
ctgtctgaagacgccaagacagccctacttaccacaagtgctggtgaagagacagctccg
gtagcaagagtgaacccggagaaagcgccgcttccacaaagaacaaaacaagagaaagct
aaaagcagagacgcatctgacaataaactggactctgaagtggttcccaaagtggctcgc
atgaccgtctccgggaagaagcagaccatgggcttcaacgttcccagcacgggggagaac
ggcgttgtcgctgccgccgcaaccctcccctcggaggccacgcccaagcgtcccgagact
ccgtccagagtgtcgaagggagacgagccctccactgttcctaccccgggccgctccgcc
ggaaaggcccggcagtcgatcaatatcaaagctgaactggagaaaaggcagggggggaaa
cctctgttgaatttggtggttataggtcacgtggatgcaggtaaaagcacactgatgggc
cacctgctgtacctgctgggccacgtaaacaagcgcaccatgcacaagtatgagcaggag
tcaaagaaggctggcaaagcctccttcgcctacgcttgggtcctggatgaaactggcgag
gagagggacaggggtgtgacgatggatgtgggcatgaccaaatttgagacaaattctaag
gtggtgaccctgatggatgcgccaggacacaaagacttcatccccaacatgatcactgga
gctgcacaggccgacgtggcggtgctcgtggtggatgccagccgaggagagttcgaggcg
ggcttcgaggcggggggtcagaccagagagcacgccctgttggtgcgctcgcttggcgtc
actcagctggctgtagctgtcaacaagatggaccaggtaagctggcaacaagagcgtttc
caagacataacctccaagcttggccatttcctcaagcaggcaggattcaaggactctgat
gtcttctacatccccaccagcggcctgtcaggagagaacctcgtcaccaggagttccgtg
acccaactcacctcctggtactctggtctcagcctgctggagcagatcgacgccttcaaa
gctcctcggaggtctgtcgacaagccgttccgactgtgcgtctccgacgtgttcaaagac
cagggttcaggcttctgtgtcacgggaaagattgaggctggttacattcagaccggagag
agaacactggcgatgcctcccaacgagacctgcacggtcaaaggtatcactctacacgac
gaggctctggactgggctgcagcaggagaccacgtcagcctgacggtcaccggcatggac
atcatcaagatcaatgtgggctgtgtgttctgtgatcccaaggagccgattcgagtctgc
actcgattcagagcccgaatccttctcttcaatatcgaggtccccatcacacaaggcttc
ccggttttgctgcattaccaaacggtaagcgagccggccaccattaggaaactggtcagc
gttctacacaagagcagcggtgaagtcctcaagaagaaaccaaagtgtttgagtaaaggt
atgaatgccattgtggagatccaaacccagaggccggtggcgttggagctgtacaaagac
tacaaagagctgggccgcttcatgctgcgatacgtcggctccaccatcgctgcaggggtt
gtcactgagatcaaacaatga
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