Pungitius pungitius (ninespine stickleback): 119194679
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Entry
119194679 CDS
T07626
Symbol
taf4b
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ppug
Pungitius pungitius (ninespine stickleback)
Pathway
ppug03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ppug00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119194679 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppug03021
]
119194679 (taf4b)
03036 Chromosome and associated proteins [BR:
ppug03036
]
119194679 (taf4b)
Transcription machinery [BR:
ppug03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119194679 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
119194679 (taf4b)
Chromosome and associated proteins [BR:
ppug03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
119194679 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
DUF4186
CofB_C
DUF3106
Motif
Other DBs
NCBI-GeneID:
119194679
NCBI-ProteinID:
XP_062419293
LinkDB
All DBs
Position
7:complement(9333978..9358166)
Genome browser
AA seq
705 aa
AA seq
DB search
MIMATNKMVVESQKLESCGGAEGGDNYIHVKILQVPAKCGSAPAVPPPPTAAGASNGLIV
SDPSKVLPVAYVHQPSSSTAPDKGRLTTSPSVMVVAKVAPQGGVAIRGTPHTTRPALSHV
VSTTTTPGRTVVITVPRAAGPQTVPVAPQLPHTGPPQFPANIQIPPGMMLIRSDSGQLML
VSQQALAQAQQAPRSVCGQAPRILIPQVSSAAGNKNHEKVTVIRMTAPPGFHPAPVQKTA
VVKVNGATPKPAVVQKLSAVSDRGSQPLVHTVVAEPKKEMAANVSQATLESVKKCKNFLV
TLIKLASSDSRSANMANNVRGLVKSLLEGKLEAEEFTEQLYRELKSTPQPCLVPFLKKSL
PAVRRLTADPHLFIQQASNSTGNHSTATGQPLSTSQQVIKQPSGVTLRPGMTTLVQSRNY
MLKSSRPIPKHVIVQSGKPFAGVLSLKQPFTQEPPCSIKFAFKDSSGSYKEDDDINDVAS
MAGVNLREENARILTSGVGSVVQSCQDQLFLSPSLVLSRILRSGRAFAVTDVGPNVVALV
SHATQECLRGLLEKLTGIAEHRRAALKEDLWHAKVSDVRSQLRFLEEVESLKKKRRDEEE
RERLLRLARSRSHTEDPHHQQLKQRAKELQQMEEAQLQQREANLAALAAIGPRKKRPLEP
TASQVTTLPRLAVQRVTRVMLRDLLLCMEQHHFLCHSLSLYRAML
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgattatggccacaaataaaatggtagtggaatcccaaaagctggagtcctgtgggggg
gcagagggtggagacaactacattcacgtgaagatattacaggtcccagctaaatgtggc
tccgcccctgctgtgccacctccacccactgctgcaggtgcttcaaatgggctcattgtc
tctgacccatctaaagtactaccagttgcatatgtccaccaacccagctcctctacagct
ccagacaaagggcgcctgaccacctccccttctgtcatggtggtagcaaaggtagccccc
caaggaggagtggccataaggggaacaccacatacaacaagaccagccctaagtcacgtg
gtctccacgaccacgaccccgggaaggaccgtggtaataacagtaccaagggcagcgggt
ccacagacggtgcctgtggccccccagctgccccacactggccctccacagttcccagcc
aatatccagatcccacccggtatgatgttgatccgcagtgacagtggtcagctgatgctc
gtatcgcagcaggctttggcacaggctcagcaggcaccaagaagtgtctgtggtcaagcc
cctagaatactgattccacaggtatcttcagcagctggaaataaaaaccatgagaaggtg
accgtgatcaggatgacagcccctcccggtttccacccagcaccagttcagaagacagct
gttgtaaaggtgaatggtgcgactcccaaaccggctgtagtccagaagctcagcgctgtg
tctgatcgggggagccagcctctcgttcatacggttgtcgcagaacccaaaaaggagatg
gcagccaacgtcagtcaggcgaccctggaaagtgtgaagaagtgcaagaacttcttggtg
actctgataaagctggcctccagtgactccaggtcagccaacatggccaacaacgtcaga
ggactggtcaagagtctgctggaagggaaactagaagcagaggagttcacagaacagctt
tatcgcgagttgaagtccactccacagccctgcttggtgcctttcctcaagaaaagtctt
cctgcagtgcgtcgcctcactgcagacccccatctattcatccaacaagcttcaaattct
accggcaaccacagcaccgccacaggacaacccctcagcaccagccagcaggtaatcaag
cagccttcaggagtgactctgagaccaggtatgacgacattggttcagtccagaaattac
atgctgaagagcagcagacccatccccaaacatgtaatagtccagtctggaaaacccttt
gcaggagtgttgtcattaaagcaacctttcactcaggaaccaccttgttcgatcaaattc
gcattcaaggacagttcaggatcatacaaagaggacgatgacatcaacgacgtagcctcc
atggctggagtcaacctgagggaggagaatgcacggatcttgacctcgggggtgggctct
gtggtccagtcatgccaggatcagctcttcctctcaccaagcctggtgctgagccgaatc
ctgcgctcaggacgggcatttgccgtaaccgatgtgggtcccaacgtggtggctctggtg
tctcatgcaacccaggagtgtctccgtgggctgctggagaagctcactgggattgcagaa
catcgcagggccgccctgaaggaggacttgtggcatgccaaagtcagtgacgtgcgttcc
cagcttcgcttcctggaggaagtggagagtttgaagaagaagagaagagatgaagaggag
agagagagactgctgcgtctagccagaagtcgctcacacactgaggacccacatcatcag
cagctgaagcaaagagccaaagagttgcagcagatggaagaagctcagctccaacagaga
gaagccaacctcgccgctctggctgccatcgggcctcgcaagaagagacctttggagccc
actgcgagccaggtgaccacgctgccccgactggctgttcagagggtgactcgggtgatg
ctgagggatctgctgctgtgtatggagcagcaccacttcctgtgtcattccctctctctg
tacagagcaatgctctga
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